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Report for CCDS5062.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5062.1 Public Homo sapiens 6 OSTM1 24 110 108 CCDS HistoryNCBI Gene:28962Re-query CCDS DB by CCDS ID:5062.1Re-query CCDS DB by GeneID:28962See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5062.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000193322.8 ENSP00000193322.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000193322.8Link to Ensembl Protein Viewer:ENSP00000193322.3Re-query CCDS DB by Nucleotide ID:ENST00000193322Re-query CCDS DB by Protein ID:ENSP00000193322
Original member Current member EBI ENST00000699569.1 ENSP00000514443.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000699569.1Link to Ensembl Protein Viewer:ENSP00000514443.1Re-query CCDS DB by Nucleotide ID:ENST00000699569Re-query CCDS DB by Protein ID:ENSP00000514443
Original member Current member EBI ENST00000492130.2 ENSP00000514453.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000492130.2Link to Ensembl Protein Viewer:ENSP00000514453.1Re-query CCDS DB by Nucleotide ID:ENST00000492130Re-query CCDS DB by Protein ID:ENSP00000514453
Original member Current member NCBI NM_014028.4 NP_054747.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014028.4Link to Protein Sequence:NP_054747.2Re-query CCDS DB by Nucleotide ID:NM_014028Re-query CCDS DB by Protein ID:NP_054747Link to BLAST:NP_054747.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054747.2 334 Q86WC4 334 100% 0 0

Chromosomal Locations for CCDS 5062.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 108044785 108044840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108049253 108049418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108051031 108051198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108054490 108054587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108064185 108064299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108074250 108074651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGAGCCGGGCCCGACAGCCGCGCAGCGGAGGTGTTCGTTGCCGCCGTGGCTGCCGCTGGGGCTGCTGC
TGTGGTCGGGGCTGGCCCTGGGCGCGCTCCCCTTCGGCAGCAGTCCGCACAGGGTCTTCCACGACCTCCT
GTCGGAGCAGCAGTTGCTGGAGGTGGAGGACTTGTCCCTGTCCCTCCTGCAGGGTGGAGGGCTGGGGCCT
CTGTCGCTGCCCCCGGACCTGCCGGATCTGGATCCTGAGTGCCGGGAGCTCCTGCTGGACTTCGCCAACA
GCAGCGCAGAGCTGACAGGGTGTCTGGTGCGCAGCGCCCGGCCCGTGCGCCTCTGTCAGACCTGCTACCC
CCTCTTCCAACAGGTCGTCAGCAAGATGGACAACATCAGCCGAGCCGCGGGGAATACTTCAGAGAGTCAG
AGTTGTGCCAGAAGTCTCTTAATGGCAGATAGAATGCAAATAGTTGTGATTCTCTCAGAATTTTTTAATA
CCACATGGCAGGAGGCAAATTGTGCAAATTGTTTAACAAACAACAGTGAAGAATTATCAAACAGCACAGT
ATATTTCCTTAATCTATTTAATCACACCCTGACCTGCTTTGAACATAACCTTCAGGGGAATGCACATAGT
CTTTTACAGACAAAAAATTATTCAGAAGTATGCAAAAACTGCCGTGAAGCATACAAAACTCTGAGTAGTC
TGTACAGTGAAATGCAAAAAATGAATGAACTTGAGAATAAGGCTGAACCTGGAACACATTTATGCATTGA
TGTGGAAGATGCAATGAACATCACTCGAAAACTATGGAGTCGAACTTTCAACTGTTCAGTCCCTTGCAGT
GACACAGTGCCTGTAATTGCTGTTTCTGTGTTCATTCTCTTTCTACCTGTTGTCTTCTACCTTAGTAGCT
TTCTTCACTCAGAGCAAAAGAAACGCAAACTCATTCTGCCCAAACGTCTCAAGTCCAGTACCAGTTTTGC
AAATATTCAGGAAAATTCAAACTGA

Translation (334 aa):
MEPGPTAAQRRCSLPPWLPLGLLLWSGLALGALPFGSSPHRVFHDLLSEQQLLEVEDLSLSLLQGGGLGP
LSLPPDLPDLDPECRELLLDFANSSAELTGCLVRSARPVRLCQTCYPLFQQVVSKMDNISRAAGNTSESQ
SCARSLLMADRMQIVVILSEFFNTTWQEANCANCLTNNSEELSNSTVYFLNLFNHTLTCFEHNLQGNAHS
LLQTKNYSEVCKNCREAYKTLSSLYSEMQKMNELENKAEPGTHLCIDVEDAMNITRKLWSRTFNCSVPCS
DTVPVIAVSVFILFLPVVFYLSSFLHSEQKKRKLILPKRLKSSTSFANIQENSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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