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Report for CCDS5111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5111.1 Public Homo sapiens 6 KPNA5 24 110 108 CCDS HistoryNCBI Gene:3841Re-query CCDS DB by CCDS ID:5111.1Re-query CCDS DB by GeneID:3841See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5111.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356348.6 ENSP00000348704.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356348.6Link to Ensembl Protein Viewer:ENSP00000348704.1Re-query CCDS DB by Nucleotide ID:ENST00000356348Re-query CCDS DB by Protein ID:ENSP00000348704
Original member Current member EBI ENST00000368564.7 ENSP00000357552.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368564.7Link to Ensembl Protein Viewer:ENSP00000357552.1Re-query CCDS DB by Nucleotide ID:ENST00000368564Re-query CCDS DB by Protein ID:ENSP00000357552
Original member Current member NCBI NM_001366306.2 NP_001353235.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001366306.2Link to Protein Sequence:NP_001353235.1Re-query CCDS DB by Nucleotide ID:NM_001366306Re-query CCDS DB by Protein ID:NP_001353235Link to BLAST:NP_001353235.1
Original member Current member NCBI NM_002269.3 NP_002260.2 Accepted alive Link to Nucleotide Sequence:NM_002269.3Link to Protein Sequence:NP_002260.2Re-query CCDS DB by Nucleotide ID:NM_002269Re-query CCDS DB by Protein ID:NP_002260Link to BLAST:NP_002260.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001353235.1 539 O15131 539 100% 0 0
NP_002260.2 539 O15131 539 100% 0 0

Chromosomal Locations for CCDS 5111.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116681335 116681338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116689320 116689453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116692055 116692156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116692293 116692392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116698704 116698798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116702019 116702150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116705072 116705160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116716219 116716318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116722126 116722289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116724297 116724375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116725751 116725876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116726495 116726622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116729563 116729741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116732136 116732323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGGATGCCATGGCTAGTCCAGGGAAAGATAACTATAGAATGAAAAGTTATAAGAATAAAGCCCTAAATC
CTCAAGAGATGCGTAGACGAAGAGAAGAAGAAGGAATACAGCTTAGAAAACAAAAAAGAGAAGAACAGTT
GTTCAAACGCAGAAATGTCTATTTGCCCAGAAATGATGAATCTATGCTTGAAAGTCCTATACAGGATCCA
GATATTAGTTCCACTGTACCCATTCCAGAGGAAGAAGTTGTTACTACAGATATGGTTCAGATGATTTTTT
CTAATAATGCTGATCAACAGCTAACAGCAACACAGAAATTTAGAAAGCTGCTTTCTAAAGAACCTAATCC
ACCAATAGATCAAGTTATACAGAAACCAGGAGTTGTACAGAGATTTGTGAAATTTCTTGAAAGAAATGAA
AATTGCACTTTACAATTTGAAGCTGCATGGGCATTAACAAATATAGCATCTGGAACTTTTCTGCATACCA
AGGTAGTGATTGAAACTGGGGCTGTTCCGATTTTTATCAAACTTCTTAATTCTGAACATGAAGATGTTCA
GGAACAGGCTGTTTGGGCACTTGGTAATATTGCTGGTGACAATGCAGAATGCAGAGATTTTGTTTTGAAT
TGTGAAATACTTCCACCTCTTTTAGAGTTATTAACAAATTCAAACAGACTCACAACAACAAGAAATGCCG
TGTGGGCCCTCTCAAATTTATGTAGAGGCAAAAACCCTCCTCCAAACTTTAGTAAGGTTTCACCTTGCTT
AAATGTCCTGTCACGACTGTTGTTTAGCAGTGACCCAGATGTGTTAGCAGACGTGTGTTGGGCCCTTTCT
TATCTCTCCGATGGACCCAATGATAAAATTCAAGCAGTCATTGATTCTGGAGTCTGTCGAAGATTGGTGG
AACTTTTGATGCACAATGATTATAAAGTTGTATCACCTGCATTAAGGGCAGTTGGTAATATTGTGACTGG
TGATGATATTCAAACACAGGTAATTTTGAATTGTTCTGCATTACCCTGTCTCTTACATTTATTGAGTAGC
CCAAAGGAGTCAATTAGAAAAGAAGCCTGCTGGACTGTTTCTAACATCACTGCTGGAAATAGAGCTCAGA
TTCAGGCTGTTATAGATGCAAATATTTTTCCTGTTTTGATTGAGATTCTTCAGAAAGCAGAGTTTCGTAC
CAGAAAAGAAGCAGCTTGGGCTATAACTAATGCAACATCAGGAGGTACTCCAGAGCAAATAAGGTATTTG
GTAGCTTTAGGCTGCATTAAACCACTTTGTGATCTTTTGACTGTTATGGACTCCAAAATAGTCCAAGTGG
CTTTAAATGGACTTGAAAATATTTTACGTCTTGGAGAACAAGAATCTAAGCAGAATGGAATAGGCATTAA
TCCATACTGTGCTCTCATTGAAGAAGCATATGGTCTGGATAAAATTGAGTTTTTGCAAAGCCATGAAAAT
CAGGAAATTTACCAGAAGGCATTTGATCTGATTGAACATTACTTTGGTGTAGAAGAAGATGACCCCAGCA
TTGTACCTCAGGTGGATGAAAACCAACAACAGTTTATATTTCAGCAGCAGGAAGCACCAATGGATGGATT
TCAACTTTAA

Translation (539 aa):
MDAMASPGKDNYRMKSYKNKALNPQEMRRRREEEGIQLRKQKREEQLFKRRNVYLPRNDESMLESPIQDP
DISSTVPIPEEEVVTTDMVQMIFSNNADQQLTATQKFRKLLSKEPNPPIDQVIQKPGVVQRFVKFLERNE
NCTLQFEAAWALTNIASGTFLHTKVVIETGAVPIFIKLLNSEHEDVQEQAVWALGNIAGDNAECRDFVLN
CEILPPLLELLTNSNRLTTTRNAVWALSNLCRGKNPPPNFSKVSPCLNVLSRLLFSSDPDVLADVCWALS
YLSDGPNDKIQAVIDSGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSS
PKESIRKEACWTVSNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYL
VALGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQESKQNGIGINPYCALIEEAYGLDKIEFLQSHEN
QEIYQKAFDLIEHYFGVEEDDPSIVPQVDENQQQFIFQQQEAPMDGFQL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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