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Report for CCDS53560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53560.1 Public Homo sapiens 10 CC2D2B 24 110 108 CCDS HistoryNCBI Gene:387707Re-query CCDS DB by CCDS ID:53560.1Re-query CCDS DB by GeneID:387707See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53560.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000410012.6 ENSP00000386988.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000410012.6Link to Ensembl Protein Viewer:ENSP00000386988.2Re-query CCDS DB by Nucleotide ID:ENST00000410012Re-query CCDS DB by Protein ID:ENSP00000386988
Original member Current member NCBI NM_001159747.2 NP_001153219.1 Accepted alive Link to Nucleotide Sequence:NM_001159747.2Link to Protein Sequence:NP_001153219.1Re-query CCDS DB by Nucleotide ID:NM_001159747Re-query CCDS DB by Protein ID:NP_001153219Link to BLAST:NP_001153219.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153219.1 401 Q6DHV5-2 401 100% 0 0

Chromosomal Locations for CCDS 53560.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 96004228 96004248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 96009825 96009923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 96012532 96012729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 96013788 96013877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 96016201 96016314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 96019203 96019337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 96019702 96019824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 96024853 96024911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 96027212 96027389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 96031820 96032008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGATGACTGAAAAACATGAGGATCACTGTCTCAAGAGCTGTAGTGGTCACTCATATATAAGAAAGAATT
GGCTTGGATGCATTGTCTTCCCTTTTTCTGCTCTTCTGCAACAATCTGAGTTTTTAGATCAAACAGAGGT
CTTGCAGAGAGCACAGATTTTTAAAAAGAATTGTAAGGCAATGTTTCCCAACCGAAGAATCGTAACTACT
GTTTTTAATGATGAAGGGATACAGTTCTTAGTCACAAGATATATCAAGGCATTAAATCCACCTCAGCAAC
TTCTGGATATATTTCTTCACAATTCTAATGCAACATTTGACCTCATTGCTCGATTTGTATCTTTGATTCC
TTTTGTGCCTAATACACCAGATGAAAATGATGGCTCTGATATATGGATGACATCAGAGCACTGCATCAGT
TTAGCTATCGGAAATAAGGAGGAGCATGCCATCCTTCTCTGTAATTTCTTTCTGTATTTTGGAAAGAAGG
CACTGGTCCTCTTGGGAACGTCAGTGTTAGAAGGGCATGTGGCTTATGTAGTAACTCAAGAAACTAATGA
ATATTTGCTTTGGAATCCATCAACTGGCCAATGTTATAAGCAGTTTGACCCGTTTTGTCCCTTAAAAAGT
GTAGATTGTTTGTTTGATGATAGAAATGTCTGGTTTAATATTCAACAAAATAATACACCAATGGCTGTAT
TTTTTGACTATTCAAAGGAAAGTTTCTGGAAGCAGTTGCTTCCAAAAAACGTTCAAGGAACAAAAATACA
AAGCATACAGCCTGAAGAAATAATTTATTTTGAAACTGATAAAAGCATGGTAGAAGATCTAAGGAATAGG
ATCGAAAGGACTCTGAAGAGTAAAGTGATGGAATGGCGACCTAAACACCCAACACATTGGAATCGACAGT
GTACTTTTATTTTGCGACAAATCCTTCCTAAGCTGGAATTTGGCATAGGAAGCTTTGTTTCATCTGAAGG
AGATAATGAATTTGAAAGAATACTACAATTTTATTGGGTCACGGGATTTCCCATCCAGATGCCATACATT
GATGTACAGTCAATTATTGATGCTGTTTATCAAACTGGAATTCACTCTGCTGAATTTCCCCAGACAGAAT
TTGCTTTAGCTGTATACATTCACCCATACCCAAACAACATATTATCTGTGTGGGTCTATTTGGCTTCCTT
AGTTCAACATCAATGA

Translation (401 aa):
MMTEKHEDHCLKSCSGHSYIRKNWLGCIVFPFSALLQQSEFLDQTEVLQRAQIFKKNCKAMFPNRRIVTT
VFNDEGIQFLVTRYIKALNPPQQLLDIFLHNSNATFDLIARFVSLIPFVPNTPDENDGSDIWMTSEHCIS
LAIGNKEEHAILLCNFFLYFGKKALVLLGTSVLEGHVAYVVTQETNEYLLWNPSTGQCYKQFDPFCPLKS
VDCLFDDRNVWFNIQQNNTPMAVFFDYSKESFWKQLLPKNVQGTKIQSIQPEEIIYFETDKSMVEDLRNR
IERTLKSKVMEWRPKHPTHWNRQCTFILRQILPKLEFGIGSFVSSEGDNEFERILQFYWVTGFPIQMPYI
DVQSIIDAVYQTGIHSAEFPQTEFALAVYIHPYPNNILSVWVYLASLVQHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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