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Report for CCDS53648.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53648.2 Public Homo sapiens 11 LGALS12 24 110 108 CCDS HistoryNCBI Gene:85329Re-query CCDS DB by CCDS ID:53648.2Re-query CCDS DB by GeneID:85329See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 53648.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000255684.10 ENSP00000255684.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000255684.10Link to Ensembl Protein Viewer:ENSP00000255684.6Re-query CCDS DB by Nucleotide ID:ENST00000255684Re-query CCDS DB by Protein ID:ENSP00000255684
Original member Current member NCBI NM_001142536.2 NP_001136008.2 Accepted alive Link to Nucleotide Sequence:NM_001142536.2Link to Protein Sequence:NP_001136008.2Re-query CCDS DB by Nucleotide ID:NM_001142536Re-query CCDS DB by Protein ID:NP_001136008Link to BLAST:NP_001136008.2

Chromosomal Locations for CCDS 53648.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 63506459 63506527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63508553 63508641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63508778 63508991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63509778 63509897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63510463 63510501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63511752 63511840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63515563 63515713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63516247 63516393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGTCACCTGGAGAAAAACTGGACCCAATTCCTGACAGCTTCATTCTGCAACCACCAGTCTTCCACCCGG
TGGTTCCTTATGTCACGACGATTTTTGGAGGCCTGCATGCAGGCAAGATGGTCATGCTGCAAGGAGTGGT
CCCTCTAGATGCACACAGGTTTCAGGTGGACTTCCAGTGTGGCTGCAGCCTGTGTCCCCGGCCAGATATC
GCCTTCCACTTCAACCCTCGCTTCCATACCACCAAGCCCCATGTCATCTGCAACACCCTGCATGGTGGAC
GCTGGCAAAGGGAGGCCCGGTGGCCCCACCTGGCCCTGCGAAGAGGCTCCAGCTTCCTCATCCTCTTTCT
CTTCGGGAATGAGGAAGTGAAGGTGAGTGTGAATGGACAGCACTTTCTCCACTTCCGCTACCGGCTCCCA
CTGTCTCATGTGGACACGCTGGGTATATTTGGTGACATCCTGGTAGAGGCTGTTGGATTCCTGAACATCA
ATCCATTTGTGGAGGGCAGCAGAGAGTACCCAGCTGGACATGAGGTGCCCTGCTCACATGCTCTTCCCCA
GGGTCTCTCGCCTGGGCAGGTCATCATAGTACGGGGACTGGTCTTGCAAGAGCCGAAGCATTTTACTGTG
AGCCTGAGGGACCAGGCTGCCCATGCTCCTGTGACACTCAGGGCCTCCTTCGCAGACAGAACTCTGGCCT
GGATCTCCCGCTGGGGGCAGAAGAAACTGATCTCAGCCCCCTTCCTCTTTTACCCCCAGAGATTCTTTGA
GGTGCTGCTCCTGTTCCAGGAGGGAGGGCTGAAGCTGGCGCTCAATGGGCAGGGGCTGGGGGCCACCAGC
ATGAACCAGCAGGCCCTGGAGCAGCTGCGGGAGCTCCGGATCAGTGGAAGTGTCCAGCTCTACTGTGTCC
ACTCCTGA

Translation (305 aa):
MSPGEKLDPIPDSFILQPPVFHPVVPYVTTIFGGLHAGKMVMLQGVVPLDAHRFQVDFQCGCSLCPRPDI
AFHFNPRFHTTKPHVICNTLHGGRWQREARWPHLALRRGSSFLILFLFGNEEVKVSVNGQHFLHFRYRLP
LSHVDTLGIFGDILVEAVGFLNINPFVEGSREYPAGHEVPCSHALPQGLSPGQVIIVRGLVLQEPKHFTV
SLRDQAAHAPVTLRASFADRTLAWISRWGQKKLISAPFLFYPQRFFEVLLLFQEGGLKLALNGQGLGATS
MNQQALEQLRELRISGSVQLYCVHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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