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Report for CCDS54374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54374.1 Public Homo sapiens 2 REEP1 24 110 108 CCDS HistoryNCBI Gene:65055Re-query CCDS DB by CCDS ID:54374.1Re-query CCDS DB by GeneID:65055See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54374.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000453231.6 ENSP00000392197.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000453231.6Link to Ensembl Protein Viewer:ENSP00000392197.2Re-query CCDS DB by Nucleotide ID:ENST00000453231Re-query CCDS DB by Protein ID:ENSP00000392197
Original member Current member NCBI NM_001164730.2 NP_001158202.1 Accepted alive Link to Nucleotide Sequence:NM_001164730.2Link to Protein Sequence:NP_001158202.1Re-query CCDS DB by Nucleotide ID:NM_001164730Re-query CCDS DB by Protein ID:NP_001158202Link to BLAST:NP_001158202.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158202.1 208 Q9H902-3 208 100% 0 0

Chromosomal Locations for CCDS 54374.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86217100 86217110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86232625 86232802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86251957 86252070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86254694 86254814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86263965 86264041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86282170 86282242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86338024 86338076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGCAGAAAGTGCTGAGCAACGGACAGACTGAAGAGGTTAGGTCTGGATCCAGGCTTATATTTGGCACCC
TTTACCCTGCGTATTATTCCTACAAGGCTGTGAAATCAAAGGACATTAAGGAATATGTCAAATGGATGAT
GTACTGGATTATATTTGCACTTTTCACCACAGCAGAGACATTCACAGACATCTTCCTTTGTTGGTTTCCA
TTCTATTATGAACTAAAAATAGCATTTGTAGCCTGGCTGCTGTCTCCCTACACAAAAGGCTCCAGCCTCC
TGTACAGGAAGTTTGTACATCCCACGCTATCTTCAAAAGAAAAGGAAATCGATGATTGTCTGGTCCAAGC
AAAAGACCGAAGTTACGATGCCCTTGTGCACTTCGGGAAGCGGGGCTTGAACGTGGCCGCCACAGCGGCT
GTGATGGCTGCTTCCAAGGGACAGGGTGCCTTATCGGAGAGACTGCGGAGCTTCAGCATGCAGGACCTCA
CCACCATCAGGGGAGACGGCGCCCCTGCTCCCTCGGGCCCCCCACCACCGGGGTCTGGGCGGGCCAGCGG
CAAACACGGCCAGCCTAAGATGTCCAGGAGTGCTTCTGAGAGCGCTAGCAGCTCAGGCACCGCCTAG

Translation (208 aa):
MQKVLSNGQTEEVRSGSRLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFP
FYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVHFGKRGLNVAATAA
VMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASGKHGQPKMSRSASESASSSGTA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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