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Report for CCDS5470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5470.1 Public Homo sapiens 7 STK17A 24 110 108 CCDS HistoryNCBI Gene:9263Re-query CCDS DB by CCDS ID:5470.1Re-query CCDS DB by GeneID:9263See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5470.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319357.6 ENSP00000319192.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319357.6Link to Ensembl Protein Viewer:ENSP00000319192.5Re-query CCDS DB by Nucleotide ID:ENST00000319357Re-query CCDS DB by Protein ID:ENSP00000319192
Original member Current member EBI ENST00000648544.1 ENSP00000497301.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648544.1Link to Ensembl Protein Viewer:ENSP00000497301.1Re-query CCDS DB by Nucleotide ID:ENST00000648544Re-query CCDS DB by Protein ID:ENSP00000497301
Original member Current member NCBI NM_004760.3 NP_004751.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004760.3Link to Protein Sequence:NP_004751.2Re-query CCDS DB by Nucleotide ID:NM_004760Re-query CCDS DB by Protein ID:NP_004751Link to BLAST:NP_004751.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004751.2 414 Q9UEE5 414 100% 0 0

Chromosomal Locations for CCDS 5470.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 43583244 43583449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43595901 43596113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43608256 43608400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43619597 43619723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43623572 43623620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43623709 43623888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43624518 43624842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGATCCCTTTGGAGAAGCCAGGCAGCGGCGGCTCCTCCCCAGGCGCCACCTCAGGCTCGGGCCGGGCAG
GCCGGGGTCTGAGCGGGCCGTGCCGGCCGCCGCCGCCGCCCCAGGCCCGCGGGCTGCTGACAGAGATACG
CGCCGTGGTGCGCACCGAGCCCTTCCAGGACGGCTACAGCCTGTGCCCGGGCCGGGAGCTGGGCAGGGGG
AAATTTGCAGTGGTGAGAAAATGTATAAAGAAAGATTCTGGGAAAGAATTTGCTGCAAAGTTCATGAGAA
AAAGAAGAAAAGGCCAAGATTGTCGGATGGAAATAATTCATGAGATTGCTGTACTTGAACTAGCACAAGA
CAATCCTTGGGTCATTAATTTACATGAAGTTTATGAGACTGCATCAGAAATGATCTTAGTTCTGGAATAT
GCTGCTGGGGGTGAAATCTTTGACCAGTGTGTTGCAGACAGAGAAGAAGCCTTTAAAGAAAAAGATGTTC
AAAGACTTATGCGACAGATTTTAGAAGGTGTTCACTTTTTACACACTCGTGATGTAGTTCATCTTGATTT
GAAGCCTCAGAATATTCTGTTGACAAGTGAATCTCCATTGGGTGACATTAAGATTGTTGATTTTGGCCTT
TCAAGAATATTGAAGAACAGTGAAGAGCTCCGAGAAATTATGGGTACCCCTGAATATGTGGCTCCTGAAA
TTCTTAGTTATGATCCTATAAGCATGGCAACAGATATGTGGAGCATTGGAGTGTTAACATATGTCATGCT
TACAGGAATATCACCTTTCTTAGGCAATGATAAACAAGAAACATTCTTAAACATCTCACAGATGAATTTA
AGTTATTCTGAGGAAGAATTTGATGTTTTGTCTGAGTCGGCTGTTGATTTCATCAGGACACTTTTAGTTA
AGAAACCTGAAGATCGAGCCACTGCTGAAGAATGTCTAAAGCACCCCTGGTTGACACAGAGCAGTATTCA
AGAGCCTTCTTTCAGGATGGAAAAGGCACTAGAAGAAGCAAATGCCCTCCAAGAAGGTCATTCTGTGCCT
GAAATTAATTCGGATACCGACAAATCAGAAACCAAGGAATCCATTGTAACCGAAGAGTTAATTGTAGTTA
CTTCATATACTCTAGGACAATGCAGACAGTCTGAAAAAGAGAAAATGGAGCAAAAGGCCATTTCCAAACG
ATTTAAATTTGAGGAACCTTTGCTACAAGAAATTCCAGGAGAATTTATCTACTGA

Translation (414 aa):
MIPLEKPGSGGSSPGATSGSGRAGRGLSGPCRPPPPPQARGLLTEIRAVVRTEPFQDGYSLCPGRELGRG
KFAVVRKCIKKDSGKEFAAKFMRKRRKGQDCRMEIIHEIAVLELAQDNPWVINLHEVYETASEMILVLEY
AAGGEIFDQCVADREEAFKEKDVQRLMRQILEGVHFLHTRDVVHLDLKPQNILLTSESPLGDIKIVDFGL
SRILKNSEELREIMGTPEYVAPEILSYDPISMATDMWSIGVLTYVMLTGISPFLGNDKQETFLNISQMNL
SYSEEEFDVLSESAVDFIRTLLVKKPEDRATAEECLKHPWLTQSSIQEPSFRMEKALEEANALQEGHSVP
EINSDTDKSETKESIVTEELIVVTSYTLGQCRQSEKEKMEQKAISKRFKFEEPLLQEIPGEFIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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