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Report for CCDS55162.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55162.1 Public Homo sapiens 7 TNPO3 24 110 108 CCDS HistoryNCBI Gene:23534Re-query CCDS DB by CCDS ID:55162.1Re-query CCDS DB by GeneID:23534See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55162.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000471234.5 ENSP00000418646.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000471234.5Link to Ensembl Protein Viewer:ENSP00000418646.1Re-query CCDS DB by Nucleotide ID:ENST00000471234Re-query CCDS DB by Protein ID:ENSP00000418646
Original member Current member NCBI NM_001191028.3 NP_001177957.2 Accepted alive Link to Nucleotide Sequence:NM_001191028.3Link to Protein Sequence:NP_001177957.2Re-query CCDS DB by Nucleotide ID:NM_001191028Re-query CCDS DB by Protein ID:NP_001177957Link to BLAST:NP_001177957.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177957.2 859 Q9Y5L0-5 859 100% 0 0

Chromosomal Locations for CCDS 55162.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 128957255 128957315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128967280 128967392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128970148 128970315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128972426 128972582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128974868 128974962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128975819 128975935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128978983 128979123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128979971 128980031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128982248 128982324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128984168 128984259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128989961 128990100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128991999 128992090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128993807 128993914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128997389 128997535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 129000429 129000567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 129001059 129001234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 129005016 129005159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 129014979 129015135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 129016983 129017056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 129017957 129018157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 129054651 129054770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2580 nt):
ATGGAAGGAGCAAAGCCGACATTGCAGCTCGTGTACCAGGCAGTGCAGGCGCTTTACCACGACCCAGATC
CCAGCGGAAAGGAGCGCGCCTCTTTTTGGCTTGGGGAGCTGCAGCGTTCGGTTCATGCATGGGAGATCTC
AGACCAGTTGTTACAGATCCGGCAGGATGTGGAGTCATGCTATTTTGCTGCACAGACCATGAAAATGAAG
ATTCAGACCTCATTTTATGAGCTCCCCACAGACTCTCATGCCTCTTTACGGGACTCATTGCTAACCCATA
TCCAGAACTTGAAAGACTTGTCACCTGTTATTGTAACGCAGCTGGCTTTAGCAATAGCAGATCTTGCCCT
ACAGATGCCTTCCTGGAAGGGATGTGTGCAAACACTGGTGGAAAAATACAGCAATGATGTGACTTCTTTG
CCTTTTTTGCTGGAGATCCTTACAGTGTTACCTGAAGAAGTACATAGTCGTTCCTTACGAATTGGAGCTA
ATCGGCGCACAGAAATTATAGAAGATTTGGCCTTCTACTCTAGTACAGTAGTATCTCTATTGATGACCTG
TGTAGAAAAAGCAGGAACAGATGAGAAAATGCTTATGAAGGTTTTTCGCTGTTTGGGAAGTTGGTTTAAC
TTGGGAGTTTTGGACAGTAACTTCATGGCTAACAATAAATTACTAGCACTCCTTTTTGAGGTTTTGCAAC
AGGATAAGACCTCGTCTAACCTACATGAAGCTGCTTCGGACTGTGTATGCTCAGCTCTCTATGCCATTGA
GAATGTGGAGACTAACTTGCCATTAGCCATGCAACTTTTTCAGGGAGTGCTGACATTGGAGACTGCCTAT
CATATGGCCGTGGCACGTGAAGATTTAGACAAAGTTCTGAATTACTGCCGTATTTTCACTGAACTATGTG
AAACTTTTCTTGAAAAAATTGTTTGTACTCCAGGCCAAGGTCTTGGGGACCTTCGAACTCTGGAGCTGCT
GCTTATCTGTGCAGGCCATCCTCAATATGAGGTAGTAGAAATTTCATTTAACTTTTGGTACCGACTGGGG
GAACATTTGTACAAAACTAACGATGAAGTTATTCATGGCATCTTCAAAGCTTACATTCAGAGGCTGCTTC
ACGCCTTGGCTCGACACTGCCAGCTGGAACCAGACCATGAGGGGGTTCCTGAGGAGACTGATGACTTTGG
GGAGTTTCGCATGAGGGTATCAGACCTGGTAAAGGACTTGATTTTCTTGATAGGGTCTATGGAGTGTTTT
GCTCAGTTATATTCTACTCTGAAAGAAGGCAACCCACCCTGGGAGGTGACAGAAGCGGTTCTCTTTATCA
TGGCTGCTATAGCAAAGAGTGTTGATCCGGAAAACAATCCAACACTTGTGGAAGTCCTAGAAGGAGTTGT
CCGCCTCCCGGAGACCGTACATACGGCTGTGCGATACACCAGCATTGAATTGGTTGGAGAGATGAGTGAA
GTCGTTGATCGAAATCCTCAGTTCCTTGGGACAGCACTTGTCCTAGCCCGATTACCTTTGGATAAGATTA
CCGAATGTCTTAGTGAACTATGTTCTGTTCAGGTTATGGCATTGAAAAAGCTGTTGTCTCAAGAGCCCAG
CAATGGCATATCCTCAGATCCCACAGTGTTCTTAGATCGCCTTGCAGTGATATTTAGGCATACCAATCCC
ATTGTGGAAAATGGACAGACTCATCCGTGTCAGAAAGTCATACAGGAAATATGGCCAGTTTTATCCGAGA
CTCTAAATAAGCACCGAGCTGATAATCGGATTGTAGAGCGTTGTTGCAGGTGCCTGCGCTTTGCTGTTCG
CTGTGTAGGCAAAGGATCTGCAGCACTGCTGCAGCCACTAGTCACACAGATGGTGAATGTGTACCACGTA
CATCAGCATTCCTGCTTCCTGTACCTTGGCAGTATCCTTGTGGATGAATATGGCATGGAAGAAGGCTGTC
GGCAGGGACTGCTAGACATGCTCCAGGCACTGTGCATCCCCACCTTTCAGCTCCTAGAACAGCAGAATGG
TCTCCAGAATCACCCTGACACTGTAGATGACCTGTTCCGGCTAGCCACCAGGTTTATTCAGCGTAGCCCT
GTCACCTTGCTGCGGAGCCAAGTGGTCATCCCTATCTTACAGTGGGCCATTGCCTCTACTACCCTGGACC
ACCGGGATGCCAATTGTAGTGTCATGAGGTTTCTACGAGACCTCATTCATACAGGGGTAGCCAATGATCA
TGAAGAAGACTTTGAATTACGGAAAGAACTGATTGGACAGGTGATGAACCAGCTTGGACAGCAGCTTGTC
AGCCAGCTGCTGCACACCTGCTGCTTTTGCCTCCCCCCCTATACCCTACCAGATGTGGCTGAAGTGCTCT
GGGAGATCATGCAGGTTGACAGACCGACTTTTTGTCGATGGTTAGAAAATTCCTTAAAAGGTTTGCCAAA
GGAAACAACCGTGGGAGCCGTCACAGTGACACACAAACAACTTACAGACTTCCACAAGCAAGTCACTAGT
GCTGAGGAATGTAAACAAGTTTGCTGGGCCTTGCGAGACTTCACCAGGTTGTTTCGATAG

Translation (859 aa):
MEGAKPTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQDVESCYFAAQTMKMK
IQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGCVQTLVEKYSNDVTSL
PFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLMKVFRCLGSWFN
LGVLDSNFMANNKLLALLFEVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAY
HMAVAREDLDKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLG
EHLYKTNDEVIHGIFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFRMRVSDLVKDLIFLIGSMECF
AQLYSTLKEGNPPWEVTEAVLFIMAAIAKSVDPENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSE
VVDRNPQFLGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEPSNGISSDPTVFLDRLAVIFRHTNP
IVENGQTHPCQKVIQEIWPVLSETLNKHRADNRIVERCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHV
HQHSCFLYLGSILVDEYGMEEGCRQGLLDMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSP
VTLLRSQVVIPILQWAIASTTLDHRDANCSVMRFLRDLIHTGVANDHEEDFELRKELIGQVMNQLGQQLV
SQLLHTCCFCLPPYTLPDVAEVLWEIMQVDRPTFCRWLENSLKGLPKETTVGAVTVTHKQLTDFHKQVTS
AEECKQVCWALRDFTRLFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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