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Report for CCDS55399.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55399.1 Public Homo sapiens X SYTL5 24 110 108 CCDS HistoryNCBI Gene:94122Re-query CCDS DB by CCDS ID:55399.1Re-query CCDS DB by GeneID:94122See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55399.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000456733.2 ENSP00000395220.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000456733.2Link to Ensembl Protein Viewer:ENSP00000395220.2Re-query CCDS DB by Nucleotide ID:ENST00000456733Re-query CCDS DB by Protein ID:ENSP00000395220
Original member Current member NCBI NM_001163334.1 NP_001156806.1 Accepted alive Link to Nucleotide Sequence:NM_001163334.1Link to Protein Sequence:NP_001156806.1Re-query CCDS DB by Nucleotide ID:NM_001163334Re-query CCDS DB by Protein ID:NP_001156806Link to BLAST:NP_001156806.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156806.1 752 Q8TDW5-2 752 100% 0 0

Chromosomal Locations for CCDS 55399.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 38033890 38034008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38054213 38054422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38072047 38072162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38073590 38073698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38076567 38076701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38089446 38089587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38094295 38094424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38096134 38096234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38102342 38102434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38103026 38103091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38106593 38106771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38108600 38108699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38110321 38110482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38120358 38120466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38122080 38122215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38125298 38125506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38126588 38126730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2259 nt):
ATGTCTAAGAACTCAGAGTTCATCAATCTGTCATTTTTATTAGATCATGAGAAGGAAATGATCCTGGGCG
TCCTAAAGAGAGATGAATATTTGAAAAAAGTGGAGGACAAGAGAATAAGGAAGCTGAAAAATGAACTCTT
AGAAGCAAAACGTAGAAGTGGGAAAACTCAACAAGAGGCCAGCAGAGTTTGTGTTCACTGTCACAGAAAC
CTGGGCCTAATCTTTGACCGGGGAGACCCTTGTCAGGCTTGCTCACTGAGGGTATGCAGGGAGTGTCGAG
TTGCAGGCCCCAATGGCAGCTGGAAGTGCACTGTCTGTGACAAAATCGCGCAGCTAAGGATTATAACTGG
TGAGTGGTTTTTTGAAGAAAAGGCAAAACGTTTCAAGCAAGTCAATGTTCTCGGCACTGATGTTGTCCGA
CAGTCCATTTTAAGAAGAAGTCCAGGAGCTGAAGAAGTACAGAGCCAAGAGCAAACCCGCCAGGATGCAG
AAAAGTCAGACACTTCACCTGTTGCTGGGAAGAAGGCCAGCCATGATGGGCCCAAGAGAAAGGGATTTCT
TCTTAGCAAGTTCAGATCGGCAACCAGAGGAGAAATCATAACTCCCAAAACTGACACTGGGCGGAGCTAT
AGCTTGGACTTAGACGGTCAACATTTTCGGAGTTTAAAATCACCTCCTGGTTCAGACAGGGGAAGCACTG
GCTCATCAGATCTCAATGACCAGGAACCTGGTCCTAGGACCCCGAAGAGCAGTCGGAGCAATGGTGTGAC
CCCAGGCACTCAGAGTTCACCAGCCCCAAGCACACGAACTGTGACCTCAGTCATCAGTAGAGAGTATGGT
TTTGAAAATTCCATGGATTTGGCTGCTATTGAAGGTACCTCTCAGGAGCTCACAAAGAGTCACCGCAGAA
ACACTTCTGGCACACCTTCCATAGCAGTGTCTGGAACCTCTCTCTCCTCAGATCAGAGTCGATCTGAGTT
AGATTTGAGTGAGTCATTTACAGAAGACTCAGAGGATACTGTAAGCATAAGAAGCAAGTCTGTCCCTGGG
GCTTTAGACAAGGACTCCTTGGAAGAGACTGAAGAAAGCATTGATGCCTTAGTGTCCTCGCAGTTATCTA
CAAACACTCACCGTCTGGCAAGTGGCCTATCAACTAGTTCTCAAGCAGGTTCTGACAGGAAGTGGACCTA
CCTAAATGTGCCTGATGCTGACTCAGACACTACCAGCCTTAACAGCATGATGAGCGTTTACAGTGAAACG
GGAGACTATGGCAACGTGAAAGTCAGTGGTGAAATCCTTCTCCATATCAGCTACTGCTACAAAACTGGTG
GGCTGTACATTTTTGTCAAGAATTGCAGAAATCTGGCCATAGGAGATGAAAAGAAACAGAGGACAGATGC
TTATGTCAAGTCATATCTTCTTCCTGACAAGTCCCGGAACAACAAGCGTAAGACCAAAATCAGAACAGGC
ACCAATCCAGAATTCAATGAAACACTAAAGTACACTATCAGCCATACCCAGCTGGAAACAAGAACTCTGC
AGCTCTCAGTCTGGCACTATGATCGATTTGGACGTAATAGCTTCCTCGGGGAAGTAGAGATTCCTTTTGA
CTCATGGAACTTTGAAAATCCAACTGATGAGTGGTTTGTGCTTCAACCCAAGGTGGAGTTTGCTCCTGAT
ATTGGCCTTCAATACAAAGGAGAGCTGACAGTTGTTTTACGTTACATTCCCCCAGAAGAGAACCTGATGC
TTCCACCAGAACAACTCCAAGGAAATAAGACTTTTAAAAAGGGAAAGAAGAAGGAGTCACCTGTAATCTC
TGGAGGAATACTAGAAGTGTTCATCAAAGAGGCAAAGAATTTGACAGCAGTGAAGTCAGGAGGCACTTCT
GATAGCTTTGTGAAGGGCTACCTGCTCCCTGATGATAGCAAAGCCACCAAGCACAAAACTCTGGTAATAA
AAAAGAGTGTTAACCCTCAGTGGAATCATACATTCATGTTCAGTGGCATCCATCCCCAGGATATAAAGAA
TGTTTGCCTAGAACTTACTATCTGGGACAAGGAGGCCTTTTCCAGCAACATCTTTCTGGGAGGAGTTCGT
TTGAATTCTGGAAGTGGTGTGAGCCATGGGAAGAACGTGGATTGGATGGACTCTCAGGGGGAAGAGCAGC
GCCTTTGGCAGAAGATGGCCAACAACCCTGGAACTCCCTTTGAGGGTGTACTCATGCTTCGTTCCAGCAT
GGGAAAATGTAGGCTCTAA

Translation (752 aa):
MSKNSEFINLSFLLDHEKEMILGVLKRDEYLKKVEDKRIRKLKNELLEAKRRSGKTQQEASRVCVHCHRN
LGLIFDRGDPCQACSLRVCRECRVAGPNGSWKCTVCDKIAQLRIITGEWFFEEKAKRFKQVNVLGTDVVR
QSILRRSPGAEEVQSQEQTRQDAEKSDTSPVAGKKASHDGPKRKGFLLSKFRSATRGEIITPKTDTGRSY
SLDLDGQHFRSLKSPPGSDRGSTGSSDLNDQEPGPRTPKSSRSNGVTPGTQSSPAPSTRTVTSVISREYG
FENSMDLAAIEGTSQELTKSHRRNTSGTPSIAVSGTSLSSDQSRSELDLSESFTEDSEDTVSIRSKSVPG
ALDKDSLEETEESIDALVSSQLSTNTHRLASGLSTSSQAGSDRKWTYLNVPDADSDTTSLNSMMSVYSET
GDYGNVKVSGEILLHISYCYKTGGLYIFVKNCRNLAIGDEKKQRTDAYVKSYLLPDKSRNNKRKTKIRTG
TNPEFNETLKYTISHTQLETRTLQLSVWHYDRFGRNSFLGEVEIPFDSWNFENPTDEWFVLQPKVEFAPD
IGLQYKGELTVVLRYIPPEENLMLPPEQLQGNKTFKKGKKKESPVISGGILEVFIKEAKNLTAVKSGGTS
DSFVKGYLLPDDSKATKHKTLVIKKSVNPQWNHTFMFSGIHPQDIKNVCLELTIWDKEAFSSNIFLGGVR
LNSGSGVSHGKNVDWMDSQGEEQRLWQKMANNPGTPFEGVLMLRSSMGKCRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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