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Report for CCDS55446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55446.1 Public Homo sapiens X RTL5 24 110 108 CCDS HistoryNCBI Gene:340526Re-query CCDS DB by CCDS ID:55446.1Re-query CCDS DB by GeneID:340526See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 55446.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000479991.1 ENSP00000418667.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000479991.1Link to Ensembl Protein Viewer:ENSP00000418667.1Re-query CCDS DB by Nucleotide ID:ENST00000479991Re-query CCDS DB by Protein ID:ENSP00000418667
Original member Current member EBI ENST00000609883.2 ENSP00000476792.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000609883.2Link to Ensembl Protein Viewer:ENSP00000476792.1Re-query CCDS DB by Nucleotide ID:ENST00000609883Re-query CCDS DB by Protein ID:ENSP00000476792
Original member Current member NCBI NM_001024455.4 NP_001019626.1 Accepted alive Link to Nucleotide Sequence:NM_001024455.4Link to Protein Sequence:NP_001019626.1Re-query CCDS DB by Nucleotide ID:NM_001024455Re-query CCDS DB by Protein ID:NP_001019626Link to BLAST:NP_001019626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019626.1 569 Q5HYW3 569 100% 0 0

Chromosomal Locations for CCDS 55446.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 72129831 72131540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGTCTGAGGCGTCAGGAAATCTCAACAGCCTCCGCATGGCGAATGTGGCCCTGCGCGAAGAATTAAATG
CCCTTCGCGGGGAGAATGCCAATTTGGGCCTCCAGCTCGGGAGAGCCCTGGCCGAGGTTAATTCCTTGCG
GGGCAATGTCTCCAGCTACATCCGCTGGCCAGTACCCATAGTGCCCGTCCTTGCGGAGGAGAACTTGGAG
TTCGCGCTCAGTGAGATCGAAGTCATTCCCGGGGGAGAACTGCCCTTCTTGTGCCGGCCTCCCCCACGCG
CGGAGCCCGACTGTATCTCGGATGATCTTTTGATTAACGTGATCCAGGATCGCAGCACCCCCGACGGGCC
CGCTGACCCCCCTCTGCTGCCCATCCCGCCCCCGCCGGCGCTGCCTCCGCCCGCGTCAAAGGAACCGCCC
CCGCAACCCCCTCTGGCACCGCTGGAGCGGCCTGAGATAGAGCCCTTTTCAGGAGACCCAGTCTACCTGG
CTGAATTCCTGATGCAGCTAGAGACCTTCATAGCCGACCATGAGGTTCATTTCCCCGGGGGCGCCGAGCG
GGTGGCCTTTCTGATCTCCTTTTTCACTGGCGAAGCCAAGGACTGGGCCATCTCGGTCACCCAGGAAGGA
AGCCCCTTGCATGCCAACTTCCCGCGCTTCCTGGATGAAATCCGTAAGGAATTCTGTGGCCCCATCCCCC
CACGTGTGGCTAAAAAGGCCATTCGCAAGCTCAAGCAGGGCCACTGTACCCTCGGCAGCTATGCAGATGC
TTTTCAGTTCCTGGCCCAATTCTTGTCTTGGGATGACTGCCGCCTCCAAAACCAATTCCTCAAAGGCCTG
TCGGAATTCTTCCGCAAAGAGCTCTTATGGTCAACAGAAATGGCCGACCTGGATGAGCTGATTCTCGAAT
GTGTGGAGATAGAAAGAAAAGTGCGCGTTCCCAAGCCTATCCCGCTCCCTGGAGTTCGAAATATCATCTT
CCCTTTTGCTCCGAGTCCCAATGAGGAAGAAAGTGAAGATGAAGAGTACTACAGTGAAGATGAAGACCAA
GAGGCACGCAGGCACAGGCTTCACTCCAAGGACCAGAGGAAGCGCATGAGGGCTTTTCAGCAAGAGATGA
AGGAGAAGGAGGAGGAGGAGATGAAGAAGGAGGAAGAAATGAAGAAGAAGGAAGAGAAGGAGGAGGAGGA
GGAAGAGGAAATGAAACAGAAAGAGGAGGAGGAGGAGATAAGGAACAAGAATGAGGAGGAAGGAGAGAGT
AAGGATGAAGAAGATGAAGATGAGGATGGGGGCCAGAAACCAGAAGGAGAGCCACAGCAGGATCCAGGGA
CTGAGGAGACCTATGGTGAGGTGGAGGAGGAGCCACTGGATGAGGCCCAAGATGATGACCTAGATGAGCT
GATGGAGATGGAGCCGACCTTTGTTCACGCGTCATCCCAGACTTCTGGCCCCACAAGTGGTTACCACGCC
GAAAACTTCCTGGGTGCATCACCTCCCATAATACAGCCTAGCAGACGGAGGAACCAGAATCGAGTCCCAC
TTCTGGAAGGCCTTCCAGGCACCAATTCACCATTCTACAGCTCCCCCCAACTGATTCGCCGCACAGGTCG
TTTAGGACAACGCCAAGTTCGAAGACGCCCCCCTGTGCTTTTCCGCCTCACTCCGAGACAGGGGGGCCAC
CGAGCTGCTCGTGGCCGAATTCGAGTTTGA

Translation (569 aa):
MSEASGNLNSLRMANVALREELNALRGENANLGLQLGRALAEVNSLRGNVSSYIRWPVPIVPVLAEENLE
FALSEIEVIPGGELPFLCRPPPRAEPDCISDDLLINVIQDRSTPDGPADPPLLPIPPPPALPPPASKEPP
PQPPLAPLERPEIEPFSGDPVYLAEFLMQLETFIADHEVHFPGGAERVAFLISFFTGEAKDWAISVTQEG
SPLHANFPRFLDEIRKEFCGPIPPRVAKKAIRKLKQGHCTLGSYADAFQFLAQFLSWDDCRLQNQFLKGL
SEFFRKELLWSTEMADLDELILECVEIERKVRVPKPIPLPGVRNIIFPFAPSPNEEESEDEEYYSEDEDQ
EARRHRLHSKDQRKRMRAFQQEMKEKEEEEMKKEEEMKKKEEKEEEEEEEMKQKEEEEEIRNKNEEEGES
KDEEDEDEDGGQKPEGEPQQDPGTEETYGEVEEEPLDEAQDDDLDELMEMEPTFVHASSQTSGPTSGYHA
ENFLGASPPIIQPSRRRNQNRVPLLEGLPGTNSPFYSSPQLIRRTGRLGQRQVRRRPPVLFRLTPRQGGH
RAARGRIRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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