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Report for CCDS55762.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55762.1 Public Homo sapiens 11 TRIM49B 24 110 108 CCDS HistoryNCBI Gene:283116Re-query CCDS DB by CCDS ID:55762.1Re-query CCDS DB by GeneID:283116See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55762.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332682.9 ENSP00000330216.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332682.9Link to Ensembl Protein Viewer:ENSP00000330216.7Re-query CCDS DB by Nucleotide ID:ENST00000332682Re-query CCDS DB by Protein ID:ENSP00000330216
Original member Current member EBI ENST00000622138.4 ENSP00000481457.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622138.4Link to Ensembl Protein Viewer:ENSP00000481457.1Re-query CCDS DB by Nucleotide ID:ENST00000622138Re-query CCDS DB by Protein ID:ENSP00000481457
Original member Current member NCBI NM_001206626.2 NP_001193555.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001206626.2Link to Protein Sequence:NP_001193555.1Re-query CCDS DB by Nucleotide ID:NM_001206626Re-query CCDS DB by Protein ID:NP_001193555Link to BLAST:NP_001193555.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193555.1 452 A6NDI0 452 100% 0 0

Chromosomal Locations for CCDS 55762.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49031600 49032010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49032276 49032371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49034146 49034376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49035095 49035117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49036301 49036398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49037478 49037977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGAATTCTGGAATCTTACAGGTCTTTCAGAGGGAACTCATCTGCCCCATCTGCATGAACTACTTCATAG
ACCCGGTCACCATAGACTGTGGGCACAGCTTTTGCAGGCCTTGTTTCTACCTCAACTGGAAAGACAGCCC
ATTTCTTGTCCAGTGCTCTGAATGCACAAAGTCAACAGGGCAGATAAACCTCAAAACCAACATTCATTTC
AAGAAGATGGCTTCTCTTGCTAGAAAAGTCAGTCTCTGGCTATTCCTGAGCTCTGAGGAGCAAATGTGTG
GCACTCACAGGGAGACAAAGAAGATGTTCTGTGAAGTGGACAGGAGCCTGCTCTGTTTGCTGTGCTCCAG
CTCTCAGGAGCACCGGGATCACAGACACTGTCCCATTGAGTCGGCTGCTGAGGAACACCAGGAGAAGCTT
TTACAGAAAATGCAGTCTTTGTGGGAAAAAGCTTGTGAAAATCACAGAAACCTGAATGTGGAAACCACCA
GAACCAGATGCTGGAAGGATTATGTGAATTTAAGGCTAGAAGCAATTAGAGCTGAGTATCAGAAGATGCC
TGCATTTCACCATGAAGAAGAAAAACATAATTTGGAGATGCTGAAAAAGAAGGGGAAAGATATTTTTCAT
CGACTTCATTTAAGTAAAGCCAAAATGGCTCATAGGAGGGAGATTTTAAGAGGAATGTATGAGGAGCTGA
ACGAAATGTGCCATAAACCAGATGTGGAGCTACTTCAGGCTTTTGGAGACATATTACACAGGAGTGAGTC
CGTGCTGCTGCACATGCCCCAGCCTCTGAATCCAGAGCTCAGTGCAGGGCCCATCACTGGACTGAGGGAC
AGGCTCAACCAATTCCGAGTGCATATTACTCTGCATCATGAAGAAGCCAACAGTGATATCTTTCTATGTG
AAATTTTGAGAAGCATGTGTATTGGATGTGACCATCAAGATGTACCCTATTTCACTGCAACACCTAGAAG
TTTTCTTGCATGGGGTGCTCAGACTTTCACCTCGGGCAAATATTACTGGGAGGTCCATGTAGGGGACTCC
TGGAATTGGGCTTTTGGTGTCTGTAATATGTATTGGAAAGAGAAGAATCAGAATGAGAAGATAGATGGAG
AGGATGGACTCTTTCTTCTTGGGTGTGTTAAGAATGACATTCAACGCAGTCTCTTTACCACCTCCCCACT
TCTGCTGCAATATATCCCAAGACCTACCAGCCGAGTAGGATTATTCCTGGATTGTGAGGCTAAGACTGTG
AGCTTTGTTGATGTTAATCAAAGCTCCCTAATATACACCATCCCTAATTGCTCTTTCTCACCTCCTCTCA
GGCCTATCTTTTGCTGTATTCACTTCTGA

Translation (452 aa):
MNSGILQVFQRELICPICMNYFIDPVTIDCGHSFCRPCFYLNWKDSPFLVQCSECTKSTGQINLKTNIHF
KKMASLARKVSLWLFLSSEEQMCGTHRETKKMFCEVDRSLLCLLCSSSQEHRDHRHCPIESAAEEHQEKL
LQKMQSLWEKACENHRNLNVETTRTRCWKDYVNLRLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKDIFH
RLHLSKAKMAHRREILRGMYEELNEMCHKPDVELLQAFGDILHRSESVLLHMPQPLNPELSAGPITGLRD
RLNQFRVHITLHHEEANSDIFLCEILRSMCIGCDHQDVPYFTATPRSFLAWGAQTFTSGKYYWEVHVGDS
WNWAFGVCNMYWKEKNQNEKIDGEDGLFLLGCVKNDIQRSLFTTSPLLLQYIPRPTSRVGLFLDCEAKTV
SFVDVNQSSLIYTIPNCSFSPPLRPIFCCIHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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