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Report for CCDS5577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5577.1 Public Homo sapiens 7 RCC1L 24 110 108 CCDS HistoryNCBI Gene:81554Re-query CCDS DB by CCDS ID:5577.1Re-query CCDS DB by GeneID:81554See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5577.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000610322.5 ENSP00000480364.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000610322.5Link to Ensembl Protein Viewer:ENSP00000480364.1Re-query CCDS DB by Nucleotide ID:ENST00000610322Re-query CCDS DB by Protein ID:ENSP00000480364
Original member Current member NCBI NM_030798.5 NP_110425.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030798.5Link to Protein Sequence:NP_110425.2Re-query CCDS DB by Nucleotide ID:NM_030798Re-query CCDS DB by Protein ID:NP_110425Link to BLAST:NP_110425.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110425.2 464 Q96I51-1 464 100% 0 0

Chromosomal Locations for CCDS 5577.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 75043032 75043109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75052711 75052796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75055901 75056074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75057529 75057616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75058588 75058769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75061207 75061291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75063292 75063343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75064582 75064648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75066664 75066792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75070640 75070769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75073414 75073737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGCGCTGGTGGCGTTGGTGGCTGGGGCTCGGCTGGGGCGGCGGCTGAGCGGGCCGGGGCTGGGGCGAG
GGCACTGGACGGCGGCCGGGCGCTCCCGGAGCCGGCGCGAAGCGGCAGAAGCCGAGGCGGAGGTGCCCGT
GGTCCAGTACGTGGGCGAGCGCGCTGCCCGCGCCGATCGCGTCTTCGTGTGGGGCTTCAGCTTCTCGGGG
GCGCTGGGCGTGCCTTCCTTTGTGGTGCCCAGCTCCGGGCCCGGGCCCCGCGCCGGCGCCCGACCGCGCC
GCAGGATCCAGCCCGTGCCCTATCGCCTGGAGCTGGACCAAAAGATTTCATCTGCTGCTTGCGGCTATGG
ATTCACACTGCTGTCCTCTAAGACTGCGGATGTTACGAAAGTCTGGGGGATGGGACTCAACAAAGATTCT
CAGCTTGGATTTCACAGGAGCCGGAAAGATAAAACGAGGGGCTACGAGTATGTGTTGGAGCCCTCACCCG
TCTCCCTGCCTCTGGACAGACCTCAGGAGACACGGGTGCTGCAGGTCTCCTGCGGCCGAGCTCACTCTCT
TGTGTTGACTGACAGGGAAGGAGTCTTCAGCATGGGAAACAATTCTTATGGGCAATGTGGAAGAAAGGTG
GTCGAAAATGAAATTTACAGTGAAAGTCACAGAGTCCACAGGATGCAGGACTTCGATGGCCAGGTGGTCC
AGGTCGCCTGTGGTCAGGATCATAGTCTGTTCCTGACGGATAAAGGAGAAGTCTATTCTTGTGGATGGGG
TGCTGATGGGCAAACAGGTCTGGGTCACTACAATATCACCAGCTCGCCCACCAAGCTGGGTGGAGACCTG
GCGGGAGTGAACGTTATCCAAGTTGCCACCTACGGTGATTGCTGCCTGGCCGTGTCCGCCGACGGAGGAC
TTTTTGGTTGGGGAAACTCGGAGTACCTGCAGCTGGCCTCTGTCACTGACTCCACACAGGTGAATGTGCC
CCGCTGCTTACACTTCTCAGGAGTGGGGAAGGTGCGACAGGCTGCATGCGGTGGCACGGGCTGTGCAGTG
TTAAACGGAGAAGGACATGTTTTTGTCTGGGGCTATGGAATTCTTGGGAAAGGTCCAAACCTAGTGGAAA
GTGCCGTCCCTGAAATGATTCCACCCACTCTCTTTGGCTTGACGGAGTTCAACCCAGAAATCCAGGTTTC
CCGCATCCGATGTGGACTCAGCCACTTTGCTGCACTGACCAACAAAGGAGAGCTGTTTGTATGGGGCAAG
AACATCCGAGGGTGCCTGGGAATCGGTCGCCTGGAGGACCAGTATTTCCCATGGAGGGTGACGATGCCTG
GGGAGCCTGTGGACGTGGCATGTGGCGTGGACCACATGGTGACCCTGGCCAAGTCATTCATCTAA

Translation (464 aa):
MALVALVAGARLGRRLSGPGLGRGHWTAAGRSRSRREAAEAEAEVPVVQYVGERAARADRVFVWGFSFSG
ALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTLLSSKTADVTKVWGMGLNKDS
QLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVSCGRAHSLVLTDREGVFSMGNNSYGQCGRKV
VENEIYSESHRVHRMQDFDGQVVQVACGQDHSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGGDL
AGVNVIQVATYGDCCLAVSADGGLFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAV
LNGEGHVFVWGYGILGKGPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGK
NIRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDHMVTLAKSFI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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