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Report for CCDS55993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55993.1 Public Homo sapiens 16 CFAP119 24 110 108 CCDS HistoryNCBI Gene:90835Re-query CCDS DB by CCDS ID:55993.1Re-query CCDS DB by GeneID:90835See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55993.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000545825.1 ENSP00000441164.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545825.1Link to Ensembl Protein Viewer:ENSP00000441164.1Re-query CCDS DB by Nucleotide ID:ENST00000545825Re-query CCDS DB by Protein ID:ENSP00000441164
Original member Current member NCBI NM_001195620.2 NP_001182549.1 Accepted alive Link to Nucleotide Sequence:NM_001195620.2Link to Protein Sequence:NP_001182549.1Re-query CCDS DB by Nucleotide ID:NM_001195620Re-query CCDS DB by Protein ID:NP_001182549Link to BLAST:NP_001182549.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182549.1 177 A1A4V9-4 177 100% 0 0

Chromosomal Locations for CCDS 55993.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30760219 30760453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30760606 30760668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30761198 30761229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30761545 30761748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGCTCAACCGCAAGACCAGCCACTTTTTGGGAATGAGGGTGCAGTCGGAGCTTGAACATCTCTCCGAGC
TGCGGCGGGAAGCGGGGAAGGATCGCAGCTCAGTGCATGGGTCGGCCGCGCGGACGCGTGCGAGTGTGCG
GACTCAGTGGACGACGGCGGCGGCGGCGAAAGCGGATGAAGACCCCGGAGCCAACTTGTTTCCGCCGCCG
CTGCCCCGACCCCGGATCTGCATGTGGAAGTACCTGGACGTCCATTCCATGCACCAGCTGGAGAAGACCA
CCAATGCTGAGATGAGGGAGGTGCTGGCTGAGCTGCTGGAGCTAGGGTGTCCTGAGCAGAGCCTGAGGGA
CGCCATCACCCTGGACCTCTTCTGCCACGCGCTCATTTTCTGCCGCCAGCAGGGCTTCTCACTGGAGCAG
ACGTCAGCGGCTTGTGCCCTGCTCCAGGATCTTCACAAGGCTTGTATTGGTGAGAGGGGGCAGCTACCAG
GTTTGAGCCCCAGGGAGAAGAGGAACCGGGCCTGGCACAAGTGA

Translation (177 aa):
MLNRKTSHFLGMRVQSELEHLSELRREAGKDRSSVHGSAARTRASVRTQWTTAAAAKADEDPGANLFPPP
LPRPRICMWKYLDVHSMHQLEKTTNAEMREVLAELLELGCPEQSLRDAITLDLFCHALIFCRQQGFSLEQ
TSAACALLQDLHKACIGERGQLPGLSPREKRNRAWHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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