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Report for CCDS5610.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5610.1 Public Homo sapiens 7 SLC25A40 24 110 108 CCDS HistoryNCBI Gene:55972Re-query CCDS DB by CCDS ID:5610.1Re-query CCDS DB by GeneID:55972See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5610.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341119.10 ENSP00000344831.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341119.10Link to Ensembl Protein Viewer:ENSP00000344831.5Re-query CCDS DB by Nucleotide ID:ENST00000341119Re-query CCDS DB by Protein ID:ENSP00000344831
Original member Current member NCBI NM_018843.4 NP_061331.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018843.4Link to Protein Sequence:NP_061331.2Re-query CCDS DB by Nucleotide ID:NM_018843Re-query CCDS DB by Protein ID:NP_061331Link to BLAST:NP_061331.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061331.2 338 Q8TBP6 338 100% 0 0

Chromosomal Locations for CCDS 5610.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 87836249 87836361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87836730 87836810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87841633 87841714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87843754 87843863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87846949 87847122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87847853 87847977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87849881 87849948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87854204 87854310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87856292 87856351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87858631 87858727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGATCCTGAGACAAGGGGACAAGAGATTATCAAAGTGACACCTCTTCAACAAATGCTTGCCTCATGTA
CTGGAGCTATACTGACATCAGTAATAGTGACACCCCTGGATGTTGTTAAAATTAGACTCCAAGCCCAAAA
CAACCCACTCCCCAAAGGAAAATGTTTTGTATATAGTAATGGACTCATGGATCATCTATGTGTCTGTGAA
GAGGGAGGCAACAAACTATGGTATAAGAAGCCAGGAAATTTCCAGGGAACATTGGATGCATTTTTTAAAA
TCATTCGAAATGAGGGCATTAAATCTCTATGGAGTGGCCTTCCTCCTACCCTAGTGATGGCAGTTCCTGC
CACAGTTATTTATTTTACCTGCTATGATCAATTAAGTGCTCTTCTGAGATCTAAGTTAGGAGAAAATGAA
ACCTGCATACCAATTGTTGCTGGAATTGTAGCCAGATTTGGTGCAGTAACTGTGATAAGTCCACTAGAAT
TGATTAGAACCAAGATGCAGTCCAAGAAGTTTTCTTACGTGGAACTGCATCGATTTGTCAGCAAGAAAGT
ATCTGAAGATGGTTGGATTTCCCTTTGGAGGGGCTGGGCTCCTACTGTTCTTAGAGATGTACCTTTCTCA
GCAATGTACTGGTATAACTATGAAATTTTAAAGAAGTGGTTATGTGAGAAATCTGGTTTATATGAGCCAA
CATTTATGATCAACTTTACTTCAGGGGCATTGTCTGGTTCTTTTGCTGCTGTTGCAACTTTACCATTTGA
TGTAGTAAAAACACAAAAGCAGACACAACTTTGGACATATGAAAGTCATAAAATTTCTATGCCTTTGCAT
ATGTCAACCTGGATTATAATGAAGAACATTGTTGCTAAAAATGGATTTTCCGGATTATTTTCAGGCCTAA
TTCCTCGCTTAATTAAAATTGCTCCTGCTTGTGCCATTATGATCAGTACATATGAATTTGGAAAGGCTTT
TTTCCAGAAACAAAATGTTCGAAGGCAGCAATACTAG

Translation (338 aa):
MDPETRGQEIIKVTPLQQMLASCTGAILTSVIVTPLDVVKIRLQAQNNPLPKGKCFVYSNGLMDHLCVCE
EGGNKLWYKKPGNFQGTLDAFFKIIRNEGIKSLWSGLPPTLVMAVPATVIYFTCYDQLSALLRSKLGENE
TCIPIVAGIVARFGAVTVISPLELIRTKMQSKKFSYVELHRFVSKKVSEDGWISLWRGWAPTVLRDVPFS
AMYWYNYEILKKWLCEKSGLYEPTFMINFTSGALSGSFAAVATLPFDVVKTQKQTQLWTYESHKISMPLH
MSTWIIMKNIVAKNGFSGLFSGLIPRLIKIAPACAIMISTYEFGKAFFQKQNVRRQQY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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