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Report for CCDS58079.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58079.1 Public Homo sapiens 10 ARHGAP22 24 110 108 CCDS HistoryNCBI Gene:58504Re-query CCDS DB by CCDS ID:58079.1Re-query CCDS DB by GeneID:58504See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58079.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000417247.6 ENSP00000410054.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417247.6Link to Ensembl Protein Viewer:ENSP00000410054.2Re-query CCDS DB by Nucleotide ID:ENST00000417247Re-query CCDS DB by Protein ID:ENSP00000410054
Original member Current member NCBI NM_001256026.2 NP_001242955.1 Accepted alive Link to Nucleotide Sequence:NM_001256026.2Link to Protein Sequence:NP_001242955.1Re-query CCDS DB by Nucleotide ID:NM_001256026Re-query CCDS DB by Protein ID:NP_001242955Link to BLAST:NP_001242955.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001242955.1 608 Q7Z5H3-3 608 100% 0 0

Chromosomal Locations for CCDS 58079.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 48446391 48446619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 48450261 48451140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 48453304 48453425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 48454088 48454161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 48455002 48455134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 48459684 48459891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 48479636 48479764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 48493439 48493490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGCCCTTCTGGCCCATCAGGTGTCTGAAGAGGAGCAGGCGTATGCCCAGGGGTGGTGCCGGGGAGCGGG
AGAAGGTGCCGGCCAACCCCGAGGCGCTCCTGCTCATGGCCAGCTCCCAGCGTGACATGGAGGACTGGGT
GCAGGCCATCCGCCGAGTCATCTGGGCCCCGCTGGGCGGAGGGATCTTTGGGCAGCGCCTAGAGGAAACA
GTCCACCACGAGCGGAAGTATGGCCCCCGCCTGGCGCCCCTGCTGGTGGAGCAGTGTGTGGACTTCATCC
GGGAGCGCGGGCTCACTGAGGAGGGGCTGTTCCGCATGCCAGGCCAGGCCAACCTGGTGAGGGACCTGCA
GGATTCCTTCGACTGTGGGGAGAAGCCACTGTTTGACAGCACAACAGACGTGCACACGGTGGCCTCCCTG
CTGAAGCTGTACCTGCGGGAGCTCCCCGAGCCCGTGGTCCCCTTCGCCAGGTACGAGGACTTCCTCAGCT
GCGCCCAGCTGCTCACCAAGGACGAGGGGGAGGGCACTCTGGAGTTGGCTAAACAAGTGAGCAACCTTCC
TCAGGCAAATTACAACCTGCTCAGATACATCTGCAAGTTTCTGGATGAAGTTCAGGCATACTCAAATGTC
AACAAGATGAGTGTCCAGAATCTGGCAACCGTTTTTGGACCTAACATTCTGCGGCCACAGGTAGAGGACC
CAGTAACCATCATGGAAGGCACTTCCCTCGTCCAGCACCTGATGACCGTCCTCATCCGCAAACACAGCCA
GCTCTTCACGGCACCGGTCCCGGAAGGGCCCACCTCCCCGCGCGGGGGCCTGCAATGCGCAGTGGGGTGG
GGCTCCGAGGAGGTCACCAGGGACAGCCAAGGAGAGCCCGGCGGCCCCGGCCTGCCCGCGCACAGGACCT
CTTCCCTGGACGGGGCGGCCGTGGCGGTGCTCTCCAGAACAGCCCCCACGGGGCCGGGGAGCCGGTGCAG
CCCTGGGAAGAAGGTGCAGACCCTGCCCAGTTGGAAGTCCTCCTTCCGGCAGCCGAGGTCCCTATCGGGA
AGCCCGAAGGGGGGCGGCTCATCCCTGGAGGTGCCCATCATCTCCTCCGGCGGGAACTGGCTTATGAACG
GGCTGTCCTCCCTGCGCGGACACCGCCGGGCCTCGTCGGGAGACCGGCTCAAGGACTCGGGCTCCGTGCA
GAGACTCTCCACCTACGACAATGTGCCCGCGCCGGGCCTGGTCCCCGGCATACCCAGCGTGGCCAGTATG
GCGTGGTCCGGGGCCTCGTCCAGCGAGTCGTCGGTGGGGGGCTCACTCAGCAGCTGCACGGCCTGCCGCG
CCAGCGACTCGTCTGCCCGCAGTTCCCTGCACACCGACTGGGCCCTGGAGCCCTCCCCGCTCCCCAGCAG
CAGCGAGGACCCCAAGTCCCTGGACCTGGACCACAGCATGGACGAGGCGGGCGCGGGTGCCAGCAACAGC
GAGCCCAGCGAGCCGGACAGCCCCACCCGGGAACACGCGCGCCGCTCCGAGGCCTTACAGGGGCTGGTCA
CTGAGCTCAGGGCCGAGCTGTGCCGCCAGCGGACTGAGTACGAGAGGAGTGTGAAAAGAATCGAAGAAGG
GAGTGCTGACCTGAGAAAACGAATGTCCCGGTTAGAAGAAGAACTGGACCAGGAAAAGAAAAAATACATC
ATGCTGGAAATAAAGCTGCGGAACTCTGAACGGGCGCGGGAGGATGCGGAGAGGAGGAACCAGCTGTTGC
AGAGGGAAATGGAGGAGTTTTTTTCGACCCTAGGAAGCTTGACTGTTGGGGCAAAAGGTGCCAGGGCCCC
AAAGTAA

Translation (608 aa):
MPFWPIRCLKRSRRMPRGGAGEREKVPANPEALLLMASSQRDMEDWVQAIRRVIWAPLGGGIFGQRLEET
VHHERKYGPRLAPLLVEQCVDFIRERGLTEEGLFRMPGQANLVRDLQDSFDCGEKPLFDSTTDVHTVASL
LKLYLRELPEPVVPFARYEDFLSCAQLLTKDEGEGTLELAKQVSNLPQANYNLLRYICKFLDEVQAYSNV
NKMSVQNLATVFGPNILRPQVEDPVTIMEGTSLVQHLMTVLIRKHSQLFTAPVPEGPTSPRGGLQCAVGW
GSEEVTRDSQGEPGGPGLPAHRTSSLDGAAVAVLSRTAPTGPGSRCSPGKKVQTLPSWKSSFRQPRSLSG
SPKGGGSSLEVPIISSGGNWLMNGLSSLRGHRRASSGDRLKDSGSVQRLSTYDNVPAPGLVPGIPSVASM
AWSGASSSESSVGGSLSSCTACRASDSSARSSLHTDWALEPSPLPSSSEDPKSLDLDHSMDEAGAGASNS
EPSEPDSPTREHARRSEALQGLVTELRAELCRQRTEYERSVKRIEEGSADLRKRMSRLEEELDQEKKKYI
MLEIKLRNSERAREDAERRNQLLQREMEEFFSTLGSLTVGAKGARAPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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