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Report for CCDS58503.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58503.3 Public Homo sapiens 17 PELP1 24 110 108 CCDS HistoryNCBI Gene:27043Re-query CCDS DB by CCDS ID:58503.3Re-query CCDS DB by GeneID:27043See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 58503.2
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data, and by conservation in primates.

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 58503.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000572293.7 ENSP00000460300.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000572293.7Link to Ensembl Protein Viewer:ENSP00000460300.2Re-query CCDS DB by Nucleotide ID:ENST00000572293Re-query CCDS DB by Protein ID:ENSP00000460300
Original member Current member EBI ENST00000574876.5 ENSP00000461625.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000574876.5Link to Ensembl Protein Viewer:ENSP00000461625.1Re-query CCDS DB by Nucleotide ID:ENST00000574876Re-query CCDS DB by Protein ID:ENSP00000461625
Original member Current member NCBI NM_014389.3 NP_055204.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014389.3Link to Protein Sequence:NP_055204.4Re-query CCDS DB by Nucleotide ID:NM_014389Re-query CCDS DB by Protein ID:NP_055204Link to BLAST:NP_055204.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055204.4 1130 Q8IZL8 1130 100% 0 0

Chromosomal Locations for CCDS 58503.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 4671439 4671531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4671691 4673145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4673250 4673456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4673619 4673674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4674510 4674669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4674809 4674956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4675079 4675195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4675274 4675362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4675797 4675884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4676036 4676162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4676357 4676507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4676753 4676812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4682502 4682573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4682803 4682952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4690888 4690993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4691378 4691442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4703863 4704111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3393 nt):
ATGGCGGCAGCCGTTCTGAGTGGGCCCTCTGCGGGCTCCGCGGCTGGGGTTCCTGGCGGGACCGGGGGTC
TC
TCGGCAGTGAGCTCGGGCCCGCGGCTCCGCCTGCTGCTGCTGGAGAGTGTTTCTGGTTTGCTGCAACC
T
CGAACGGGGTCTGCCGTTGCTCCGGTGCATCCCCCAAACCGCTCGGCCCCACATTTGCCCGGGCTCATG
TGC
CTATTGCGGCTGCATGGGTCGGTGGGCGGGGCCCAGAACCTTTCAGCTCTTGGGGCATTGGTGAGTC
TC
AGTAATGCACGTCTCAGTTCCATCAAAACTCGGTTTGAGGGCCTGTGTCTGCTGTCCCTGCTGGTAGG
G
GAGAGCCCCACAGAGCTATTCCAGCAGCACTGTGTGTCTTGGCTTCGGAGCATTCAGCAGGTGTTACAG
ACC
CAGGACCCGCCTGCCACAATGGAGCTGGCCGTGGCTGTCCTGAGGGACCTCCTCCGATATGCAGCCC
AG
CTGCCTGCACTGTTCCGGGACATCTCCATGAACCACCTCCCTGGCCTTCTCACCTCCCTGCTGGGCCT
C
AGGCCAGAGTGTGAGCAGTCAGCATTGGAAGGAATGAAGGCTTGTATGACCTATTTCCCTCGGGCTTGT
GGT
TCTCTCAAAGGCAAGCTGGCCTCATTTTTTCTGTCTAGGGTGGATGCCTTGAGCCCTCAGCTCCAAC
AG
TTGGCCTGTGAGTGTTATTCCCGGCTGCCCTCTTTAGGGGCTGGCTTTTCCCAAGGCCTGAAGCACAC
C
GAGAGCTGGGAGCAGGAGCTACACAGTCTGCTGGCCTCACTGCACACCCTGCTGGGGGCCCTGTACGAG
GGA
GCAGAGACTGCTCCTGTGCAGAATGAAGGCCCTGGGGTGGAGATGCTGCTGTCCTCAGAAGATGGTG
AT
GCCCATGTCCTTCTCCAGCTTCGGCAGAGGTTTTCGGGACTGGCCCGCTGCCTAGGGCTCATGCTCAG
C
TCTGAGTTTGGAGCTCCCGTGTCCGTCCCTGTGCAGGAAATCCTGGATTTCATCTGCCGGACCCTCAGC
GTC
AGTAGCAAGAATATTAGCTTGCATGGAGATGGTCCCCTGCGGCTGCTGCTGCTGCCCTCTATCCACC
TT
GAGGCCTTGGACCTGCTGTCTGCACTCATCCTCGCGTGTGGAAGCCGGCTCTTGCGCTTTGGGATCCT
G
ATCGGCCGCCTGCTTCCCCAGGTCCTCAATTCCTGGAGCATCGGTAGAGATTCCCTCTCTCCAGGCCAG
GAG
AGGCCTTACAGCACGGTTCGGACCAAGGTGTATGCGATATTAGAGCTGTGGGTGCAGGTTTGTGGGG
CC
TCGGCGGGAATGCTTCAGGGAGGAGCCTCTGGAGAGGCCCTGCTCACCCACCTGCTCAGCGACATCTC
C
CCGCCAGCTGATGCCCTTAAGCTGCGTAGCCCGCGGGGGAGCCCTGATGGGAGTTTGCAGACTGGGAAG
CCT
AGCGCCCCCAAGAAGCTAAAGCTGGATGTGGGGGAAGCTATGGCCCCGCCAAGCCACCGGAAAGGGG
AT
AGCAATGCCAACAGCGACGTGTGTGCGGCTGCACTCAGAGGCCTCAGCCGGACCATCCTCATGTGTGG
G
CCTCTCATCAAGGAGGAGACTCACAGGAGACTGCATGACCTGGTCCTCCCCCTGGTCATGGGTGTACAG
CAG
GGTGAGGTCCTAGGCAGCTCCCCGTACACGAGCTCCCGCTGCCGCCGTGAACTCTACTGCCTGCTGC
TG
GCGCTGCTGCTGGCCCCGTCTCCTCGCTGCCCACCTCCTCTTGCCTGTGCCCTGCAAGCCTTCTCCCT
C
GGCCAGCGAGAAGATAGCCTTGAGGTCTCCTCTTTCTGCTCAGAAGCACTGGTGACCTGTGCTGCTCTG
ACC
CACCCCCGGGTTCCTCCCCTGCAGCCCATGGGCCCCACCTGCCCCACACCTGCTCCAGTTCCCCCTC
CT
GAGGCCCCATCGCCCTTCAGGGCCCCACCGTTCCATCCTCCGGGCCCCATGCCCTCAGTGGGCTCCAT
G
CCCTCAGCAGGCCCCATGCCTTCAGCAGGCCCCATGCCCTCAGCAGGCCCTGTGCCCTCGGCACGCCCT
GGA
CCTCCCACCACAGCCAACCACCTAGGCCTTTCTGTCCCAGGCCTAGTGTCTGTCCCTCCCCGGCTTC
TT
CCTGGCCCTGAGAACCACCGGGCAGGCTCAAATGAGGACCCCATCCTTGCCCCTAGTGGGACTCCCCC
A
CCTACTATACCCCCAGATGAAACTTTTGGGGGGAGAGTGCCCAGACCAGCCTTTGTCCACTATGACAAG
GAG
GAGGCATCTGATGTGGAGATCTCCTTGGAAAGTGACTCTGATGACAGCGTGGTGATCGTGCCCGAGG
GG
CTTCCCCCCCTGCCACCCCCACCACCCTCAGGTGCCACACCACCCCCTATAGCCCCCACTGGGCCACC
A
ACAGCCTCCCCTCCTGTGCCAGCGAAGGAGGAGCCTGAAGAACTTCCTGCAGCCCCAGGGCCTCTCCCG
CCA
CCCCCACCTCCGCCGCCGCCTGTTCCTGGTCCTGTGACGCTCCCTCCACCCCAGTTGGTCCCTGAAG
GG
ACTCCTGGTGGGGGAGGACCCCCAGCCCTGGAAGAGGATTTGACAGTTATTAATATCAACAGCAGTGA
T
GAAGAGGAGGAGGAAGAGGAAGAAGAGGAAGAAGAAGAAGAGGAAGAAGAGGAAGAGGAGGAAGACTTT
GAG
GAAGAGGAAGAGGATGAAGAGGAATATTTTGAAGAGGAAGAAGAGGAGGAAGAAGAGTTTGAGGAAG
AA
TTTGAGGAAGAAGAAGGTGAGTTAGAGGAAGAAGAAGAAGAGGAGGATGAGGAGGAGGAAGAAGAACT
G
GAAGAGGTGGAAGACCTGGAGTTTGGCACAGCAGGAGGGGAGGTAGAAGAAGGTGCACCTCCACCCCCA
ACC
CTGCCTCCAGCTCTGCCTCCCCCTGAGTCTCCCCCAAAGGTGCAGCCAGAACCCGAACCTGAACCCG
GG
CTGCTTTTGGAAGTGGAGGAGCCAGGGACGGAGGAGGAGCGTGGGGCTGACACAGCTCCCACCCTGGC
C
CCTGAAGCGCTCCCCTCCCAGGGAGAGGTGGAGAGGGAAGGGGAAAGCCCTGCGGCAGGGCCCCCTCCC
CAG
GAGCTTGTTGAAGAAGAGCCCTCTGCTCCCCCAACCCTGTTGGAAGAGGAGACTGAGGATGGGAGTG
AC
AAGGTGCAGCCCCCACCAGAGACACCTGCAGAAGAAGAGATGGAGACAGAGACAGAGGCCGAAGCTCT
C
CAGGAAAAGGAGCAGGATGACACAGCTGCCATGCTGGCCGACTTCATCGATTGTCCCCCTGATGATGAG
AAG
CCACCACCTCCCACAGAGCCTGACTCCTAG


Translation (1130 aa):
MAAAVLSGPSAGSAAGVPGGTGGLSAVSSGPRLRLLLLESVSGLLQPRTGSAVAPVHPPNRSAPHLPGLM
C
LLRLHGSVGGAQ
NLSALGALVSLSNARLSSIKTRFEGLCLLSLLVGESPTELFQQHCVSWLRSIQQVLQ
T
QDPPATMELAVAVLRDLLRYAAQLPALFRDISMNHLPGLLTSLLGLRPE
CEQSALEGMKACMTYFPRAC
G
SLK
GKLASFFLSRVDALSPQLQQLACECYSRLPSLGAGFSQGLKHTESWEQELHSLLASLHTLLGALYE
G
AET
APVQNEGPGVEMLLSSEDGDAHVLLQLRQRFSGLARCLGLMLSSEFGAPVSVPVQEILDFICRTLS
V
SSKNI
SLHGDGPLRLLLLPSIHLEALDLLSALILACGSRLLRFGILIGRLLPQVLNSWSIGRDSLSPGQ
E
RPY
STVRTKVYAILELWVQVCGASAGMLQGGASGEALLTHLLSDISPPADALKLRSPRGSPDGSLQTGK
P
SAPKKLKLDVGEAMAPPSHRKGDSNANSDVCAAALR
GLSRTILMCGPLIKEETHRRLHDLVLPLVMGVQ
Q
GEVLGSSPYTSSRCRRELYCLLLALLLAPSPRCPPPLACALQAFSLGQREDSLE
VSSFCSEALVTCAAL
T
HPRVPPLQPMGPTCPTPAPVPPPEAPSPFRAPPFHPPGPMPSVGSMPSAGPMPSAGPMPSAGPVPSARP
G
PPTTANHLGLSVPGLVSVPPRLLPGPENHRAGSNEDPILAPSGTPPPTIPPDETFGGRVPRPAFVHYDK
E
EASDVEISLESDSDDSVVIVPEGLPPLPPPPPSGATPPPIAPTGPPTASPPVPAKEEPEELPAAPGPLP
P
PPPPPPPVPGPVTLPPPQLVPEGTPGGGGPPALEEDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDF
E
EEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEEDEEEEEELEEVEDLEFGTAGGEVEEGAPPPP
T
LPPALPPPESPPKVQPEPEPEPGLLLEVEEPGTEEERGADTAPTLAPEALPSQGEVEREGESPAAGPPP
Q
ELVEEEPSAPPTLLEEETEDGSDKVQPPPETPAEEEMETETEAEALQEK
EQDDTAAMLADFIDCPPDDE
K
PPPPTEPDS




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser