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Report for CCDS58761.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58761.1 Public Homo sapiens 20 TGM6 24 110 108 CCDS HistoryNCBI Gene:343641Re-query CCDS DB by CCDS ID:58761.1Re-query CCDS DB by GeneID:343641See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58761.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381423.1 ENSP00000370831.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381423.1Link to Ensembl Protein Viewer:ENSP00000370831.1Re-query CCDS DB by Nucleotide ID:ENST00000381423Re-query CCDS DB by Protein ID:ENSP00000370831
Original member Current member NCBI NM_001254734.2 NP_001241663.1 Accepted alive Link to Nucleotide Sequence:NM_001254734.2Link to Protein Sequence:NP_001241663.1Re-query CCDS DB by Nucleotide ID:NM_001254734Re-query CCDS DB by Protein ID:NP_001241663Link to BLAST:NP_001241663.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001241663.1 625 O95932-2 625 100% 0 0

Chromosomal Locations for CCDS 58761.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 2380969 2380975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2394452 2394625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2395194 2395436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2396506 2396624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2397918 2398046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2399561 2399738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2400306 2400444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2403397 2403500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2403581 2403823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2417232 2417573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2430446 2430600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2432490 2432534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGGCAGGGATCAGAGTCACCAAGGTGGACTGGCAGCGGTCGAGGAATGGCGCTGCCCACCACACCCAGG
AGTACCCCTGCCCTGAGCTGGTGGTTCGCAGGGGCCAGTCGTTCAGCCTCACGCTGGAGCTGAGCAGAGC
CCTGGACTGTGAGGAGATCCTCATCTTCACGATGGAGACAGGACCCCGGGCTTCTGAGGCCCTCCACACC
AAAGCTGTGTTCCAGACATCGGAGCTGGAGCGGGGTGAGGGCTGGACAGCAGCAAGGGAGGCTCAGATGG
AGAAAACTCTGACCGTCAGTCTCGCCAGCCCTCCCAGTGCTGTCATTGGCCGCTACCTGCTGAGCATCAG
GCTTTCCTCTCACCGCAAACACAGCAACCGGAGGCTGGGCGAGTTTGTTCTCCTTTTCAACCCATGGTGT
GCAGAGGACGATGTGTTTCTGGCCTCAGAGGAGGAGAGACAGGAGTACGTGCTCAGCGACAGCGGCATCA
TCTTCCGAGGCGTGGAGAAGCACATACGAGCCCAGGGCTGGAACTACGGGCAGTTTGAGGAGGACATCCT
GAACATCTGCCTCTCCATCCTGGATCGAAGCCCCGGTCACCAAAACAACCCAGCCACCGACGTGTCCTGC
CGCCACAACCCCATCTACGTCACCAGGGTCATCAGTGCCATGGTGAACAGCAACAACGACCGAGGTGTGG
TGCAAGGACAGTGGCAGGGCAAGTACGGCGGCGGCACCAGCCCGCTGCACTGGCGCGGCAGCGTGGCCAT
TCTGCAGAAGTGGCTCAAGGGCAGGTACAAGCCAGTCAAGTACGGCCAGTGCTGGGTCTTCGCCGGAGTC
CTGTGCACAGTCCTCAGGTGCTTGGGGATAGCCACACGGGTCGTGTCCAACTTCAACTCAGCCCACGACA
CAGACCAGAACCTGAGTGTGGACAAATACGTGGACTCCTTCGGGCGGACCCTGGAGGACCTGACAGAAGA
CAGCATGTGGAATTTCCATGTCTGGAATGAGAGCTGGTTTGCCCGGCAGGACCTAGGCCCCTCTTACAAT
GGCTGGCAGGTTCTGGATGCCACCCCCCAGGAGGAGAGTGAAGGTGTGTTCCGGTGCGGCCCAGCCTCAG
TCACCGCCATCCGCGAGGGTGATGTGCACCTGGCTCACGATGGCCCCTTCGTGTTTGCGGAGGTCAACGC
CGACTACATCACCTGGCTGTGGCACGAGGATGAGAGCCGGGAGCGTGTATACTCAAACACGAAGAAGATT
GGGAGATGCATCAGCACCAAGGCGGTGGGCAGTGACTCCCGCGTGGACATCACTGACCTCTACAAGTATC
CGGAAGGGTCCCGGAAAGAGAGGCAGGTGTACAGCAAGGCGGTGAACAGGCTGTTCGGCGTGGAAGCCTC
TGGAAGGAGAATCTGGATCCGCAGGGCTGGGGGTCGCTGTCTCTGGCGTGACGACCTCCTGGAGCCTGCC
ACCAAGCCCAGCATCGCTGGCAAGTTCAAGGTGCTAGAGCCTCCCATGCTGGGCCACGACCTGAGACTGG
CCCTGTGCTTGGCCAACCTCACCTCCCGGGCCCAGCGGGTGAGGGTCAACCTGAGCGGTGCCACCATCCT
CTATACCCGCAAGCCAGTGGCAGAGATCCTGCATGAATCCCACGCCGTGAGGCTGGGGCCGCAAGAAGAG
AAGAGAATCCCAATTACAATATCTTACTCTAAGTATAAAGAAGACCTGACAGAGGACAAGAAGATCCTGT
TGGCTGCCATGTGCCTTGTCACCAAAGGAGAGAAGCTTCTGGTGGAGAAGGACATTACTCTAGAGGACTT
CATCACCATCAAGCGTGCCTACCCTGGAGCCTCAGGAGAGGGCCTCAGTCCAGTTTGA

Translation (625 aa):
MAGIRVTKVDWQRSRNGAAHHTQEYPCPELVVRRGQSFSLTLELSRALDCEEILIFTMETGPRASEALHT
KAVFQTSELERGEGWTAAREAQMEKTLTVSLASPPSAVIGRYLLSIRLSSHRKHSNRRLGEFVLLFNPWC
AEDDVFLASEEERQEYVLSDSGIIFRGVEKHIRAQGWNYGQFEEDILNICLSILDRSPGHQNNPATDVSC
RHNPIYVTRVISAMVNSNNDRGVVQGQWQGKYGGGTSPLHWRGSVAILQKWLKGRYKPVKYGQCWVFAGV
LCTVLRCLGIATRVVSNFNSAHDTDQNLSVDKYVDSFGRTLEDLTEDSMWNFHVWNESWFARQDLGPSYN
GWQVLDATPQEESEGVFRCGPASVTAIREGDVHLAHDGPFVFAEVNADYITWLWHEDESRERVYSNTKKI
GRCISTKAVGSDSRVDITDLYKYPEGSRKERQVYSKAVNRLFGVEASGRRIWIRRAGGRCLWRDDLLEPA
TKPSIAGKFKVLEPPMLGHDLRLALCLANLTSRAQRVRVNLSGATILYTRKPVAEILHESHAVRLGPQEE
KRIPITISYSKYKEDLTEDKKILLAAMCLVTKGEKLLVEKDITLEDFITIKRAYPGASGEGLSPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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