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Report for CCDS68127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
68127.1 Public Homo sapiens 20 PTPRT 24 110 108 CCDS HistoryNCBI Gene:11122Re-query CCDS DB by CCDS ID:68127.1Re-query CCDS DB by GeneID:11122See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 68127.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373198.8 ENSP00000362294.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373198.8Link to Ensembl Protein Viewer:ENSP00000362294.4Re-query CCDS DB by Nucleotide ID:ENST00000373198Re-query CCDS DB by Protein ID:ENSP00000362294
Original member Current member NCBI NM_133170.4 NP_573400.3 Accepted alive Link to Nucleotide Sequence:NM_133170.4Link to Protein Sequence:NP_573400.3Re-query CCDS DB by Nucleotide ID:NM_133170Re-query CCDS DB by Protein ID:NP_573400Link to BLAST:NP_573400.3

Chromosomal Locations for CCDS 68127.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 42080879 42080932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42081882 42082017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42084682 42084845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42085728 42085853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42098421 42098552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42102124 42102297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42104569 42104718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42106786 42106921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42110333 42110487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42115199 42115315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42118403 42118500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42119935 42119971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42128754 42128830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42141915 42142002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42161352 42161542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42199240 42199388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42236229 42236258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42248687 42248822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42270397 42270453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42282489 42282525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42315723 42315996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42350628 42350730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42352084 42352285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42448220 42448329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42472266 42472562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42677866 42678159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42756462 42756636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42771435 42771550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42780218 42780299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42791195 42791466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42885807 42885932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43189646 43189733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4383 nt):
ATGGCGAGCCTCGCCGCGCTCGCCCTCAGCCTGCTCCTGAGGCTGCAGCTGCCGCCACTGCCCGGCGCCC
GGGCTCAGAGCGCCGCAGGTGGCTGTTCCTTTGATGAGCACTACAGCAACTGTGGTTATAGTGTGGCTCT
AGGGACCAATGGGTTCACCTGGGAGCAGATTAACACATGGGAGAAACCAATGCTGGACCAGGCAGTGCCC
ACAGGATCTTTCATGATGGTGAACAGCTCTGGGAGAGCCTCTGGCCAGAAGGCCCACCTTCTCCTGCCAA
CCCTGAAGGAGAATGACACCCACTGCATCGACTTCCATTACTACTTCTCCAGCCGTGACAGGTCCAGCCC
AGGGGCCTTGAACGTCTACGTGAAGGTGAATGGTGGCCCCCAAGGGAACCCTGTGTGGAATGTGTCCGGG
GTCGTCACTGAGGGCTGGGTGAAGGCAGAGCTCGCCATCAGCACTTTCTGGCCACATTTCTATCAGGTGA
TATTTGAATCCGTCTCATTGAAGGGTCATCCTGGCTACATCGCCGTGGACGAGGTCCGGGTCCTTGCTCA
TCCATGCAGAAAAGCACCTCATTTTCTGCGACTCCAAAACGTGGAGGTGAATGTGGGGCAGAATGCCACA
TTTCAGTGCATTGCTGGTGGGAAGTGGTCTCAGCATGACAAGCTTTGGCTCCAGCAATGGAATGGCAGGG
ACACGGCCCTGATGGTCACCCGTGTGGTCAACCACAGGCGCTTCTCAGCCACAGTCAGTGTGGCAGACAC
TGCCCAGCGGAGCGTCAGCAAGTACCGCTGTGTGATCCGCTCTGATGGTGGGTCTGGTGTGTCCAACTAC
GCGGAGCTGATCGTGAAAGAGCCTCCCACGCCCATTGCTCCCCCAGAGCTGCTGGCTGTGGGGGCCACAT
ACCTGTGGATCAAGCCAAATGCCAACTCCATCATCGGGGATGGCCCCATCATCCTGAAGGAAGTGGAATA
TCGCACCACCACAGGCACGTGGGCAGAGACCCACATAGTCGACTCTCCCAACTATAAGCTGTGGCATCTG
GACCCCGATGTTGAGTATGAGATCCGAGTGCTCCTCACACGACCAGGTGAGGGGGGTACGGGACCGCCAG
GGCCTCCCCTCACCACCAGGACCAAGTGTGCAGATCCGGTACATGGCCCACAGAACGTGGAAATCGTAGA
CATCAGAGCCCGGCAGCTGACCCTGCAGTGGGAGCCCTTCGGCTACGCGGTGACCCGCTGCCATAGCTAC
AACCTCACCGTGCAGTACCAGTATGTGTTCAACCAGCAGCAGTACGAGGCCGAGGAGGTCATCCAGACCT
CCTCCCACTACACCCTGCGAGGCCTGCGCCCCTTCATGACCATCCGGCTGCGACTCTTGCTGTCTAACCC
CGAGGGCCGAATGGAGAGCGAGGAGCTGGTGGTGCAGACTGAGGAAGACGTTCCAGGAGCTGTTCCTCTA
GAATCCATCCAAGGGGGGCCCTTTGAGGAGAAGATCTACATCCAGTGGAAACCTCCCAATGAGACCAATG
GGGTCATCACGCTCTACGAGATCAACTACAAGGCTGTCGGCTCGCTGGACCCAAGTGCTGACCTCTCGAG
CCAGAGGGGGAAAGTGTTCAAGCTCCGGAATGAAACCCACCACCTCTTTGTGGGTCTGTACCCAGGGACC
ACCTATTCCTTCACCATCAAGGCCAGCACAGCAAAGGGCTTTGGGCCCCCTGTCACCACTCGGATTGCCA
CCAAAATTTCAGCTCCATCCATGCCTGAGTACGACACAGACACCCCATTGAATGAGACAGACACGACCAT
CACAGTGATGCTGAAACCCGCTCAGTCCCGGGGAGCTCCTGTCAGTGTTTATCAGCTGGTTGTCAAGGAG
GAGCGACTTCAGAAGTCACGGAGGGCAGCTGACATTATTGAGTGCTTTTCGGTGCCCGTGAGCTATCGGA
ATGCCTCCAGCCTCGATTCTCTACACTACTTTGCTGCTGAGTTGAAGCCTGCCAACCTGCCTGTCACCCA
GCCATTTACAGTGGGTGACAATAAGACATACAATGGCTACTGGAACCCTCCTCTCTCTCCCCTGAAAAGC
TACAGCATCTACTTCCAGGCACTCAGCAAAGCCAATGGAGAGACCAAAATCAACTGTGTTCGTCTGGCTA
CAAAAGCACCAATGGGCAGCGCCCAGGTGACCCCGGGGACTCCACTCTGCCTCCTCACCACAGGTGCCTC
CACCCAGAATTCTAACACTGTGGAGCCAGAGAAGCAGGTGGACAACACCGTGAAGATGGCTGGCGTGATC
GCTGGCCTCCTCATGTTCATCATCATTCTCCTGGGCGTGATGCTCACCATCAAAAGGAGAAGAAATGCTT
ATTCCTACTCCTATTACTTGAAGCTGGCCAAGAAGCAGAAGGAGACCCAGAGTGGAGCCCAGAGGGAGAT
GGGGCCTGTGGCCTCTGCCGACAAACCCACCACCAAGCTCAGCGCCAGCCGCAATGATGAAGGCTTCTCT
TCTAGTTCTCAGGACGTCAACGGATTCACAGATGGCAGCCGCGGGGAGCTTTCCCAGCCCACCCTCACGA
TCCAGACTCATCCCTACCGCACCTGTGACCCTGTGGAGATGAGCTACCCCCGGGACCAGTTCCAACCCGC
CATCCGGGTGGCTGACTTGCTGCAGCACATCACGCAGATGAAGAGAGGCCAGGGCTACGGGTTCAAGGAG
GAATACGAGGCCTTACCAGAGGGGCAGACAGCTTCGTGGGACACAGCCAAGGAGGATGAAAACCGCAATA
AGAATCGATATGGGAACATCATATCCTACGACCATTCCCGGGTGAGGCTGCTGGTGCTGGATGGAGACCC
GCACTCTGACTACATCAATGCCAACTACATTGACGGATACCATCGACCTCGGCACTACATTGCGACTCAA
GGTCCGATGCAGGAGACTGTAAAGGACTTTTGGAGAATGATCTGGCAGGAGAACTCCGCCAGCATCGTCA
TGGTCACAAACCTGGTGGAAGTGGGCAGGGTGAAATGTGTGCGATACTGGCCAGATGACACGGAGGTCTA
CGGAGACATTAAAGTCACCCTGATTGAAACAGAGCCCCTGGCAGAATACGTCATACGCACCTTCACAGTC
CAGAAGAAAGGCTACCATGAGATCCGGGAGCTCCGCCTCTTCCACTTCACCAGCTGGCCTGACCACGGCG
TTCCCTGCTATGCCACTGGCCTTCTGGGCTTCGTCCGCCAGGTCAAGTTCCTCAACCCCCCGGAAGCTGG
GCCCATAGTGGTCCACTGCAGTGCTGGGGCTGGGCGGACTGGCTGCTTCATTGCCATTGACACCATGCTT
GACATGGCCGAGAATGAAGGGGTGGTGGACATCTTCAACTGCGTGCGTGAGCTCCGGGCCCAAAGGGTCA
ACCTGGTACAGACAGAGGAGCAATATGTGTTTGTGCACGATGCCATCCTGGAAGCGTGCCTCTGTGGCAA
CACTGCCATCCCTGTGTGTGAGTTCCGTTCTCTCTACTACAATATCAGCAGGCTGGACCCCCAGACAAAC
TCCAGCCAAATCAAAGATGAATTTCAGACCCTCAACATTGTGACACCCCGTGTGCGGCCCGAGGACTGCA
GCATTGGGCTCCTGCCCCGGAACCATGATAAGAATCGAAGTATGGACGTGCTGCCTCTGGACCGCTGCCT
GCCCTTCCTTATCTCAGTGGACGGAGAATCCAGCAATTACATCAACGCAGCACTGATGGATAGCCACAAG
CAGCCTGCCGCCTTCGTGGTCACCCAGCACCCTCTACCCAACACCGTGGCAGACTTCTGGAGGCTGGTGT
TCGATTACAACTGCTCCTCTGTGGTGATGCTGAATGAGATGGACACTGCCCAGTTCTGTATGCAGTACTG
GCCTGAGAAGACCTCCGGGTGCTATGGGCCCATCCAGGTGGAGTTCGTCTCCGCAGACATCGACGAGGAC
ATCATCCACAGAATATTCCGCATCTGTAACATGGCCCGGCCACAGGATGGTTATCGTATAGTCCAGCACC
TCCAGTACATTGGCTGGCCTGCCTACCGGGACACGCCCCCCTCCAAGCGCTCTCTGCTCAAAGTGGTCCG
ACGACTGGAGAAGTGGCAGGAGCAGTATGACGGGAGGGAGGGACGTACTGTGGTCCACTGCCTAAATGGG
GGAGGCCGTAGTGGAACCTTCTGTGCCATCTGCAGTGTGTGTGAGATGATCCAGCAGCAAAACATCATTG
ACGTGTTCCACATCGTGAAAACACTGCGTAACAACAAATCCAACATGGTGGAGACCCTGGAACAGTATAA
ATTTGTATACGAGGTGGCACTGGAATATTTAAGCTCCTTTTAG

Translation (1460 aa):
MASLAALALSLLLRLQLPPLPGARAQSAAGGCSFDEHYSNCGYSVALGTNGFTWEQINTWEKPMLDQAVP
TGSFMMVNSSGRASGQKAHLLLPTLKENDTHCIDFHYYFSSRDRSSPGALNVYVKVNGGPQGNPVWNVSG
VVTEGWVKAELAISTFWPHFYQVIFESVSLKGHPGYIAVDEVRVLAHPCRKAPHFLRLQNVEVNVGQNAT
FQCIAGGKWSQHDKLWLQQWNGRDTALMVTRVVNHRRFSATVSVADTAQRSVSKYRCVIRSDGGSGVSNY
AELIVKEPPTPIAPPELLAVGATYLWIKPNANSIIGDGPIILKEVEYRTTTGTWAETHIVDSPNYKLWHL
DPDVEYEIRVLLTRPGEGGTGPPGPPLTTRTKCADPVHGPQNVEIVDIRARQLTLQWEPFGYAVTRCHSY
NLTVQYQYVFNQQQYEAEEVIQTSSHYTLRGLRPFMTIRLRLLLSNPEGRMESEELVVQTEEDVPGAVPL
ESIQGGPFEEKIYIQWKPPNETNGVITLYEINYKAVGSLDPSADLSSQRGKVFKLRNETHHLFVGLYPGT
TYSFTIKASTAKGFGPPVTTRIATKISAPSMPEYDTDTPLNETDTTITVMLKPAQSRGAPVSVYQLVVKE
ERLQKSRRAADIIECFSVPVSYRNASSLDSLHYFAAELKPANLPVTQPFTVGDNKTYNGYWNPPLSPLKS
YSIYFQALSKANGETKINCVRLATKAPMGSAQVTPGTPLCLLTTGASTQNSNTVEPEKQVDNTVKMAGVI
AGLLMFIIILLGVMLTIKRRRNAYSYSYYLKLAKKQKETQSGAQREMGPVASADKPTTKLSASRNDEGFS
SSSQDVNGFTDGSRGELSQPTLTIQTHPYRTCDPVEMSYPRDQFQPAIRVADLLQHITQMKRGQGYGFKE
EYEALPEGQTASWDTAKEDENRNKNRYGNIISYDHSRVRLLVLDGDPHSDYINANYIDGYHRPRHYIATQ
GPMQETVKDFWRMIWQENSASIVMVTNLVEVGRVKCVRYWPDDTEVYGDIKVTLIETEPLAEYVIRTFTV
QKKGYHEIRELRLFHFTSWPDHGVPCYATGLLGFVRQVKFLNPPEAGPIVVHCSAGAGRTGCFIAIDTML
DMAENEGVVDIFNCVRELRAQRVNLVQTEEQYVFVHDAILEACLCGNTAIPVCEFRSLYYNISRLDPQTN
SSQIKDEFQTLNIVTPRVRPEDCSIGLLPRNHDKNRSMDVLPLDRCLPFLISVDGESSNYINAALMDSHK
QPAAFVVTQHPLPNTVADFWRLVFDYNCSSVVMLNEMDTAQFCMQYWPEKTSGCYGPIQVEFVSADIDED
IIHRIFRICNMARPQDGYRIVQHLQYIGWPAYRDTPPSKRSLLKVVRRLEKWQEQYDGREGRTVVHCLNG
GGRSGTFCAICSVCEMIQQQNIIDVFHIVKTLRNNKSNMVETLEQYKFVYEVALEYLSSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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