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Report for CCDS7278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7278.1 Public Homo sapiens 10 HNRNPH3 24 110 108 CCDS HistoryNCBI Gene:3189Re-query CCDS DB by CCDS ID:7278.1Re-query CCDS DB by GeneID:3189See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7278.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265866.12 ENSP00000265866.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265866.12Link to Ensembl Protein Viewer:ENSP00000265866.7Re-query CCDS DB by Nucleotide ID:ENST00000265866Re-query CCDS DB by Protein ID:ENSP00000265866
Original member Current member NCBI NM_001322434.2 NP_001309363.1 Accepted alive Link to Nucleotide Sequence:NM_001322434.2Link to Protein Sequence:NP_001309363.1Re-query CCDS DB by Nucleotide ID:NM_001322434Re-query CCDS DB by Protein ID:NP_001309363Link to BLAST:NP_001309363.1
Original member Current member NCBI NM_001322436.2 NP_001309365.1 Accepted alive Link to Nucleotide Sequence:NM_001322436.2Link to Protein Sequence:NP_001309365.1Re-query CCDS DB by Nucleotide ID:NM_001322436Re-query CCDS DB by Protein ID:NP_001309365Link to BLAST:NP_001309365.1
Original member Current member NCBI NM_001322437.2 NP_001309366.1 Accepted alive Link to Nucleotide Sequence:NM_001322437.2Link to Protein Sequence:NP_001309366.1Re-query CCDS DB by Nucleotide ID:NM_001322437Re-query CCDS DB by Protein ID:NP_001309366Link to BLAST:NP_001309366.1
Original member Current member NCBI NM_012207.3 NP_036339.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012207.3Link to Protein Sequence:NP_036339.1Re-query CCDS DB by Nucleotide ID:NM_012207Re-query CCDS DB by Protein ID:NP_036339Link to BLAST:NP_036339.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309363.1 346 P31942-1 346 100% 0 0
NP_001309365.1 346 P31942-1 346 100% 0 0
NP_001309366.1 346 P31942-1 346 100% 0 0
NP_036339.1 346 P31942-1 346 100% 0 0

Chromosomal Locations for CCDS 7278.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 68337222 68337333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68337858 68337996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68338503 68338687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68339140 68339226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68339440 68339555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68341174 68341309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68341585 68341680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68341759 68341851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68341978 68342054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGATTGGGTTATGAAACATAATGGTCCAAATGACGCTAGTGATGGGACAGTACGACTTCGTGGACTAC
CATTTGGTTGCAGCAAAGAGGAAATAGTTCAGTTCTTTCAAGGGTTGGAAATCGTGCCAAATGGGATAAC
ATTGACGATGGACTACCAGGGGAGAAGCACAGGGGAGGCCTTCGTGCAGTTTGCTTCAAAGGAGATAGCA
GAAAATGCTCTGGGGAAACACAAGGAAAGAATAGGGCACAGGTATATTGAGATCTTCAGAAGTAGCAGGA
GTGAAATCAAAGGATTTTATGATCCACCAAGAAGATTGCTGGGACAGCGACCGGGACCATATGATAGACC
AATAGGAGGAAGAGGGGGTTATTATGGAGCTGGGCGTGGAAGTATGTATGACAGAATGCGACGAGGAGGT
GATGGATATGATGGTGGTTATGGAGGTTTTGATGACTATGGTGGCTATAATAATTACGGCTATGGGAATG
ATGGCTTTGATGACAGAATGAGAGATGGAAGAGGTATGGGAGGACATGGCTATGGTGGAGCTGGTGATGC
AAGTTCAGGTTTTCATGGTGGTCATTTCGTACATATGAGAGGGTTGCCTTTTCGTGCAACTGAAAATGAC
ATTGCTAATTTCTTCTCACCACTAAATCCAATACGAGTTCATATTGATATTGGAGCTGATGGCAGAGCCA
CAGGAGAAGCAGATGTAGAGTTTGTGACACATGAAGATGCAGTAGCTGCCATGTCTAAAGATAAAAATAA
CATGCAACATCGATATATTGAACTCTTCTTGAATTCTACTCCTGGAGGCGGCTCTGGCATGGGAGGTTCT
GGAATGGGAGGCTACGGAAGAGATGGAATGGATAATCAGGGAGGCTATGGATCAGTTGGAAGAATGGGAA
TGGGGAACAATTACAGTGGAGGATATGGTACTCCTGATGGTTTGGGTGGTTATGGCCGTGGTGGTGGAGG
CAGTGGAGGTTACTATGGGCAAGGCGGCATGAGTGGAGGTGGATGGCGTGGGATGTACTGA

Translation (346 aa):
MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIA
ENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYGAGRGSMYDRMRRGG
DGYDGGYGGFDDYGGYNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATEND
IANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGS
GMGGYGRDGMDNQGGYGSVGRMGMGNNYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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