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Report for CCDS7647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7647.1 Public Homo sapiens 10 MMP21 24 110 108 CCDS HistoryNCBI Gene:118856Re-query CCDS DB by CCDS ID:7647.1Re-query CCDS DB by GeneID:118856See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7647.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368808.3 ENSP00000357798.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368808.3Link to Ensembl Protein Viewer:ENSP00000357798.3Re-query CCDS DB by Nucleotide ID:ENST00000368808Re-query CCDS DB by Protein ID:ENSP00000357798
Original member Current member NCBI NM_147191.1 NP_671724.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_147191.1Link to Protein Sequence:NP_671724.1Re-query CCDS DB by Nucleotide ID:NM_147191Re-query CCDS DB by Protein ID:NP_671724Link to BLAST:NP_671724.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_671724.1 569 Q8N119 569 100% 0 0

Chromosomal Locations for CCDS 7647.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 125766662 125766961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125767532 125767704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125770334 125770591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125772218 125772359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125772611 125772750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125773831 125774365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125775660 125775821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGCTCGCCGCCTCCATCTTCCGTCCGACACTGCTGCTCTGCTGGCTGGCTGCTCCCTGGCCCACCCAGC
CCGAGAGTCTCTTCCACAGCCGGGACCGCTCGGACCTGGAGCCGTCCCCACTGCGCCAGGCCAAGCCCAT
TGCCGACCTCCACGCTGCTCAGCGGTTCCTGTCCAGATACGGCTGGTCAGGGGTGTGGGCGGCCTGGGGG
CCCAGTCCCGAGGGGCCGCCGGAGACCCCCAAGGGCGCCGCCCTGGCCGAGGCGGTGCGCAGGTTCCAGC
GGGCGAACGCGCTGCCGGCCAGCGGGGAGCTGGACGCGGCCACCCTAGCGGCCATGAACCGGCCGCGCTG
CGGGGTCCCGGACATGCGCCCACCGCCCCCCTCCGCCCCGCCTTCGCCCCCGGGCCCGCCCCCCAGAGCC
CGCTCCAGGCGCTCCCCGCGGGCGCCGCTGTCCTTGTCCCGGCGGGGTTGGCAGCCCCGGGGCTACCCCG
ACGGCGGAGCTGCCCAGGCCTTCTCCAAGAGGACGCTGAGCTGGCGGCTGCTGGGCGAGGCCCTGAGCAG
CCAACTGTCCGTGGCCGACCAGCGGCGCATTGTGGCGCTGGCCTTCAGGATGTGGAGCGAGGTGACGCCG
CTGGACTTCCGCGAGGACCTGGCCGCCCCCGGGGCCGCGGTCGACATCAAGCTGGGCTTTGGGAGAGGCC
GGCACCTGGGCTGTCCGCGGGCCTTCGATGGGAGCGGGCAGGAGTTTGCACACGCCTGGCGCCTAGGTGA
CATTCACTTTGACGACGACGAGCACTTCACACCTCCCACCAGTGACACGGGCATCAGCCTTCTCAAGGTG
GCCGTCCATGAAATTGGCCATGTCCTGGGCTTGCCTCACACCTACAGGACGGGATCCATAATGCAACCAA
ATTACATTCCCCAGGAGCCTGCCTTTGAGTTGGACTGGTCAGACAGGAAAGCAATTCAAAAGCTGTATGG
CTCCTGTGAGGGATCATTTGATACTGCGTTTGACTGGATTCGCAAAGAGAGAAACCAATATGGAGAGGTG
ATGGTGAGATTTAGCACATATTTCTTCCGTAACAGCTGGTACTGGCTTTATGAAAATCGAAACAATAGGA
CACGCTATGGGGACCCTATCCAAATCCTCACTGGCTGGCCTGGAATCCCAACACACAACATAGATGCCTT
TGTTCACATCTGGACATGGAAAAGAGATGAACGTTATTTTTTTCAAGGAAATCAATACTGGAGATATGAC
AGTGACAAGGATCAGGCCCTCACAGAAGATGAACAAGGAAAAAGCTATCCCAAATTGATTTCAGAAGGAT
TTCCTGGCATCCCAAGTCCCCTAGACACGGCGTTTTATGACCGAAGACAGAAGTTAATTTACTTCTTCAA
GGAGTCCCTTGTATTTGCATTTGATGTCAACAGAAATCGAGTACTTAATTCTTATCCAAAGAGGATTACT
GAAGTTTTTCCAGCAGTAATACCACAAAATCATCCTTTCAGAAATATAGATTCCGCTTATTACTCCTATG
CATACAACTCCATTTTCTTTTTCAAAGGCAATGCATACTGGAAGGTAGTTAATGACAAGGACAAACAACA
GAATTCCTGGCTTCCTGCTAATGGCTTATTTCCAAAAAAGTTTATTTCAGAGAAGTGGTTTGATGTTTGT
GACGTCCATATCTCCACACTGAACATGTAA

Translation (569 aa):
MLAASIFRPTLLLCWLAAPWPTQPESLFHSRDRSDLEPSPLRQAKPIADLHAAQRFLSRYGWSGVWAAWG
PSPEGPPETPKGAALAEAVRRFQRANALPASGELDAATLAAMNRPRCGVPDMRPPPPSAPPSPPGPPPRA
RSRRSPRAPLSLSRRGWQPRGYPDGGAAQAFSKRTLSWRLLGEALSSQLSVADQRRIVALAFRMWSEVTP
LDFREDLAAPGAAVDIKLGFGRGRHLGCPRAFDGSGQEFAHAWRLGDIHFDDDEHFTPPTSDTGISLLKV
AVHEIGHVLGLPHTYRTGSIMQPNYIPQEPAFELDWSDRKAIQKLYGSCEGSFDTAFDWIRKERNQYGEV
MVRFSTYFFRNSWYWLYENRNNRTRYGDPIQILTGWPGIPTHNIDAFVHIWTWKRDERYFFQGNQYWRYD
SDKDQALTEDEQGKSYPKLISEGFPGIPSPLDTAFYDRRQKLIYFFKESLVFAFDVNRNRVLNSYPKRIT
EVFPAVIPQNHPFRNIDSAYYSYAYNSIFFFKGNAYWKVVNDKDKQQNSWLPANGLFPKKFISEKWFDVC
DVHISTLNM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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