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Report for CCDS77704.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77704.1 Public Homo sapiens 3 SLC6A6 24 110 108 CCDS HistoryNCBI Gene:6533Re-query CCDS DB by CCDS ID:77704.1Re-query CCDS DB by GeneID:6533See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77704.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000613060.4 ENSP00000481625.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613060.4Link to Ensembl Protein Viewer:ENSP00000481625.1Re-query CCDS DB by Nucleotide ID:ENST00000613060Re-query CCDS DB by Protein ID:ENSP00000481625
Original member Current member NCBI NM_001134367.3 NP_001127839.2 Accepted alive Link to Nucleotide Sequence:NM_001134367.3Link to Protein Sequence:NP_001127839.2Re-query CCDS DB by Nucleotide ID:NM_001134367Re-query CCDS DB by Protein ID:NP_001127839Link to BLAST:NP_001127839.2

Chromosomal Locations for CCDS 77704.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 14402594 14402847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14416412 14416453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14443628 14443863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14445717 14445851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14447582 14447816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14457950 14458082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14466516 14466650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14467853 14467956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14468088 14468212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14472205 14472317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14477205 14477342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14478466 14478568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14479085 14479185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14481671 14481841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14484867 14485007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2166 nt):
ATGGGTGATGCTGAGAGCTGCCTGCTCAGACAACAGACACGCGAGGTCAGGAAGAAGCCGCTTATAAATT
ACCGCTTCCTTCGCGCCGCCGCCAACGCCGAGCCCCGAGGACCGCAAGCCCAGAGGACAAGCTGCGCCAA
GAGGGAGTGCGGAGCGTTCACCCAGCGGGTCAGAGAGCGAGCGGGCAGGCAGCCCCCGGCCGGCGGAACC
CGGCACAGCCGAGCAGAGCGCGGGCGGCGCCGCAGCCACCCCAGATCCAGAACCAGAACCACAGCCCTTC
TGAGGAGCTCCCAAACCAAGGAGATGGCCACCAAGGAGAAGCTGCAGTGTCTGAAAGATTTCCACAAGGA
CATCCTGAAGCCCTCACCAGGGAAGAGCCCAGGCACGCGGCCTGAGGACGAGGCTGAGGGAAAACCTCCG
CAGAGGGAGAAGTGGTCTAGCAAGATCGACTTTGTGCTCTCTGTGGCTGGCGGCTTCGTGGGCTTGGGCA
ACGTCTGGCGCTTCCCGTACCTCTGCTACAAGAATGGTGGAGGTGCGTTTCTCATACCGTATTTTATTTT
CCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTTGGAGATCATCATAGGCCAGTACACCTCTGAAGGGGGC
ATCACCTGCTGGGAAAAGATCTGCCCCTTGTTCTCTGGTATCGGCTATGCCTCCGTTGTAATTGTGTCCC
TCCTGAATGTCTACTACATCGTCATCCTGGCCTGGGCCACATACTACCTGTTCCAGTCCTTCCAGAAGGA
GCTGCCCTGGGCACACTGCAACCACAGCTGGAACACACCTCACTGCATGGAGGACACCATGCGCAAGAAC
AAGAGTGTCTGGATCACCATCAGCTCCACCAACTTCACCTCCCCTGTCATCGAGTTCTGGGAGCGCAACG
TGCTGAGCTTGTCCCCTGGAATCGACCACCCAGGCTCTCTGAAATGGGACCTCGCTCTCTGCCTTCTTTT
AGTCTGGCTAGTGTGTTTCTTCTGCATCTGGAAGGGCGTCAGGTCCACTGGGAAGGTCGTCTACTTCACA
GCCACTTTTCCATTCGCCATGCTCCTGGTGCTGCTGGTCCGAGGGCTGACGCTGCCGGGCGCGGGCGCAG
GCATCAAGTTCTATCTGTATCCTGACATCACCCGCCTTGAGGACCCACAGGTGTGGATTGACGCTGGGAC
TCAGATATTCTTCTCTTATGCCATCTGCCTGGGGGCTATGACCTCGCTGGGGAGCTACAACAAGTACAAG
TATAACTCGTACAGGGACTGTATGCTGCTGGGATGCCTGAACAGTGGTACCAGTTTTGTGTCTGGCTTCG
CAATTTTTTCCATCCTGGGCTTCATGGCACAAGAGCAAGGGGTGGACATTGCTGATGTGGCTGAGTCAGG
TCCTGGCCTGGCCTTCATTGCCTACCCAAAAGCTGTGACAATGATGCCGCTGCCCACATTTTGGTCCATT
CTTTTTTTTATTATGCTTCTCTTGCTTGGACTGGATAGCCAGTTTGTTGAAGTTGAAGGACAGATCACAT
CCTTGGTTGATCTTTACCCATCCTTCCTAAGGAAGGGTTATCGTCGGGAAATCTTCATCGCCTTCGTGTG
TAGCATCAGCTACCTGCTGGGGCTGACGATGGTGACGGAGGGTGGCATGTATGTGTTTCAGCTCTTTGAC
TACTATGCAGCTAGCGGTGTATGCCTTTTGTGGGTTGCATTCTTTGAATGTTTTGTTATTGCCTGGATAT
ATGGAGGTGATAACCTTTATGATGGTATTGAGGACATGATTGGCTATCGGCCCGGGCCCTGGATGAAGTA
CAGCTGGGCTGTGATCACTCCAGTTCTCTGTGTTGGATGTTTCATCTTCTCGCTCGTCAAGTACGTACCC
CTGACCTACAACAAAACATACGTGTACCCCAACTGGGCCATTGGGCTGGGCTGGAGCCTGGCCCTTTCCT
CCATGCTCTGCGTTCCCTTGGTCATCGTCATCCGCCTCTGCCAGACTGAGGGGCCGTTCCTTGTGAGAGT
CAAGTACCTGCTGACCCCAAGGGAACCCAACCGCTGGGCTGTGGAGCGCGAGGGAGCCACACCTTACAAC
TCTCGCACCGTCATGAACGGCGCTCTCGTGAAACCGACCCACATCATTGTGGAGACCATGATGTGA

Translation (721 aa):
MGDAESCLLRQQTREVRKKPLINYRFLRAAANAEPRGPQAQRTSCAKRECGAFTQRVRERAGRQPPAGGT
RHSRAERGRRRSHPRSRTRTTALLRSSQTKEMATKEKLQCLKDFHKDILKPSPGKSPGTRPEDEAEGKPP
QREKWSSKIDFVLSVAGGFVGLGNVWRFPYLCYKNGGGAFLIPYFIFLFGSGLPVFFLEIIIGQYTSEGG
ITCWEKICPLFSGIGYASVVIVSLLNVYYIVILAWATYYLFQSFQKELPWAHCNHSWNTPHCMEDTMRKN
KSVWITISSTNFTSPVIEFWERNVLSLSPGIDHPGSLKWDLALCLLLVWLVCFFCIWKGVRSTGKVVYFT
ATFPFAMLLVLLVRGLTLPGAGAGIKFYLYPDITRLEDPQVWIDAGTQIFFSYAICLGAMTSLGSYNKYK
YNSYRDCMLLGCLNSGTSFVSGFAIFSILGFMAQEQGVDIADVAESGPGLAFIAYPKAVTMMPLPTFWSI
LFFIMLLLLGLDSQFVEVEGQITSLVDLYPSFLRKGYRREIFIAFVCSISYLLGLTMVTEGGMYVFQLFD
YYAASGVCLLWVAFFECFVIAWIYGGDNLYDGIEDMIGYRPGPWMKYSWAVITPVLCVGCFIFSLVKYVP
LTYNKTYVYPNWAIGLGWSLALSSMLCVPLVIVIRLCQTEGPFLVRVKYLLTPREPNRWAVEREGATPYN
SRTVMNGALVKPTHIIVETMM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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