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Report for CCDS8137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8137.1 Public Homo sapiens 11 SLC29A2 24 110 108 CCDS HistoryNCBI Gene:3177Re-query CCDS DB by CCDS ID:8137.1Re-query CCDS DB by GeneID:3177See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8137.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357440.7 ENSP00000350024.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357440.7Link to Ensembl Protein Viewer:ENSP00000350024.2Re-query CCDS DB by Nucleotide ID:ENST00000357440Re-query CCDS DB by Protein ID:ENSP00000350024
Original member Current member EBI ENST00000544554.5 ENSP00000439456.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544554.5Link to Ensembl Protein Viewer:ENSP00000439456.1Re-query CCDS DB by Nucleotide ID:ENST00000544554Re-query CCDS DB by Protein ID:ENSP00000439456
Original member Current member EBI ENST00000546034.1 ENSP00000440329.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546034.1Link to Ensembl Protein Viewer:ENSP00000440329.1Re-query CCDS DB by Nucleotide ID:ENST00000546034Re-query CCDS DB by Protein ID:ENSP00000440329
Original member Current member NCBI NM_001300868.2 NP_001287797.1 Accepted alive Link to Nucleotide Sequence:NM_001300868.2Link to Protein Sequence:NP_001287797.1Re-query CCDS DB by Nucleotide ID:NM_001300868Re-query CCDS DB by Protein ID:NP_001287797Link to BLAST:NP_001287797.1
Original member Current member NCBI NM_001532.3 NP_001523.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001532.3Link to Protein Sequence:NP_001523.2Re-query CCDS DB by Nucleotide ID:NM_001532Re-query CCDS DB by Protein ID:NP_001523Link to BLAST:NP_001523.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287797.1 456 Q14542-1 456 100% 0 0
NP_001523.2 456 Q14542-1 456 100% 0 0

Chromosomal Locations for CCDS 8137.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 66363436 66363547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66364225 66364424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66365936 66366021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66366126 66366231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66366431 66366564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66367464 66367548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66367772 66367869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66368537 66368671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66369060 66369199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66369369 66369532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66371244 66371325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66371563 66371591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGGCGCGAGGAGACGCCCCGCGGGACAGCTACCACCTGGTCGGGATCAGCTTCTTCATCCTGGGGCTGG
GCACCCTCCTTCCCTGGAACTTCTTCATCACCGCCATCCCGTACTTCCAGGCGCGACTGGCCGGGGCCGG
CAACAGCACAGCCAGGATCCTGAGCACCAACCACACGGGTCCCGAGGATGCCTTCAACTTCAACAATTGG
GTGACGCTGCTGTCCCAGCTGCCCCTGCTGCTCTTCACCCTCCTCAACTCCTTCCTGTACCAGTGCGTCC
CGGAGACGGTGCGCATTCTGGGCAGCCTGCTGGCCATACTGCTGCTCTTTGCCCTGACAGCAGCGCTGGT
CAAGGTGGACATGAGCCCCGGACCCTTCTTCTCCATCACCATGGCCTCCGTCTGCTTCATCAACTCCTTC
AGTGCAGTCCTACAGGGCAGCCTCTTCGGGCAGCTGGGCACCATGCCCTCCACCTACAGCACCCTCTTCC
TCAGCGGCCAGGGCCTGGCTGGGATCTTTGCTGCCCTTGCCATGCTCCTGTCCATGGCCAGTGGCGTGGA
CGCCGAGACCTCTGCCCTGGGGTACTTTATCACGCCCTGTGTGGGCATCCTCATGTCCATCGTGTGTTAC
CTGAGCCTGCCTCACCTGAAGTTTGCCCGCTACTACCTGGCCAATAAATCATCCCAGGCCCAAGCTCAGG
AGCTGGAGACCAAAGCTGAGCTCCTCCAGTCTGATGAGAACGGGATTCCCAGTAGTCCCCAGAAAGTAGC
TCTGACCCTGGATCTTGACCTGGAGAAGGAGCCGGAATCAGAGCCAGATGAGCCCCAGAAGCCAGGAAAA
CCTTCAGTCTTCACTGTCTTCCAGAAGATCTGGCTGACAGCGCTGTGCCTTGTGTTGGTCTTCACAGTCA
CCCTGTCCGTCTTCCCCGCCATCACAGCCATGGTGACCAGCTCCACCAGTCCTGGGAAGTGGAGTCAGTT
CTTCAACCCCATCTGCTGCTTCCTCCTCTTCAACATCATGGACTGGCTGGGACGGAGCCTGACCTCTTAC
TTCCTGTGGCCAGACGAGGACAGCCGGCTGCTGCCCCTGCTGGTCTGCCTGCGGTTCCTGTTCGTGCCCC
TCTTCATGCTGTGCCACGTGCCCCAGAGGTCCCGGCTGCCCATCCTCTTCCCACAGGATGCCTACTTCAT
CACCTTCATGCTGCTCTTTGCCGTTTCTAATGGCTACCTGGTGTCCCTCACCATGTGCCTGGCGCCCAGG
CAGGTGCTGCCACACGAGAGGGAGGTGGCCGGCGCCCTCATGACCTTCTTCCTGGCCCTGGGACTTTCCT
GTGGAGCCTCCCTCTCCTTCCTCTTCAAGGCGCTGCTCTGA

Translation (456 aa):
MARGDAPRDSYHLVGISFFILGLGTLLPWNFFITAIPYFQARLAGAGNSTARILSTNHTGPEDAFNFNNW
VTLLSQLPLLLFTLLNSFLYQCVPETVRILGSLLAILLLFALTAALVKVDMSPGPFFSITMASVCFINSF
SAVLQGSLFGQLGTMPSTYSTLFLSGQGLAGIFAALAMLLSMASGVDAETSALGYFITPCVGILMSIVCY
LSLPHLKFARYYLANKSSQAQAQELETKAELLQSDENGIPSSPQKVALTLDLDLEKEPESEPDEPQKPGK
PSVFTVFQKIWLTALCLVLVFTVTLSVFPAITAMVTSSTSPGKWSQFFNPICCFLLFNIMDWLGRSLTSY
FLWPDEDSRLLPLLVCLRFLFVPLFMLCHVPQRSRLPILFPQDAYFITFMLLFAVSNGYLVSLTMCLAPR
QVLPHEREVAGALMTFFLALGLSCGASLSFLFKALL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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