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Report for CCDS81567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81567.1 Public Homo sapiens 11 NUP160 24 110 108 CCDS HistoryNCBI Gene:23279Re-query CCDS DB by CCDS ID:81567.1Re-query CCDS DB by GeneID:23279See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81567.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000526870.1 ENSP00000431495.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000526870.1Link to Ensembl Protein Viewer:ENSP00000431495.1Re-query CCDS DB by Nucleotide ID:ENST00000526870Re-query CCDS DB by Protein ID:ENSP00000431495
Original member Current member NCBI NM_001318399.1 NP_001305328.1 Accepted alive Link to Nucleotide Sequence:NM_001318399.1Link to Protein Sequence:NP_001305328.1Re-query CCDS DB by Nucleotide ID:NM_001318399Re-query CCDS DB by Protein ID:NP_001305328Link to BLAST:NP_001305328.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305328.1 224 Q12769-2 224 100% 0 0

Chromosomal Locations for CCDS 81567.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 47840228 47840588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47847848 47847959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47848219 47848420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGCTTCACCTGTCCGCAGCTCCGCCCGCCCCACCCCCGGAAGTGACGGCGACCGCGCGGCCCTGCCTTT
GTTCCGTTGGGCGTCGCGGCGACGGCGGGAAGATGGCGGCGGCGGGAGCCCTGGAACGGAGCTTCGTGGA
GCTAAGCGGAGCTGAGCGCGAAAGGCCGAGGCACTTTCGGGAATTCACAGTCTGCAGCATTGGGACTGCA
AATGCCGTGGCTGGCGCCGTAAAATACAGTGAAAGCGCGGGAGGCTTTTACTACGTGGAGAGTGGCAAGT
TGTTCTCCGTAACCAGAAACAGGTTCATTCATTGGAAGACCTCTGGAGATACATTGGAGCTGATGGAGGA
GTCACTGGACATAAATCTGTTGAATAATGCCATTCGCCTAAAATTCCAAAATTGCAGTGTTTTACCTGGA
GGGGTTTATGTCTCTGAGACTCAGAATCGTGTGATAATCTTGATGTTAACCAATCAAACAGTGCACAGGT
TACTTTTACCACACCCCTCCCGGATGTATAGGAGTGTAAGTTGGCTAAGTGCAATATCTTTTATTTCCCA
AATTACTCTGGGTGTCACAAATGTAGTGCTGGAGCGATGTCTTTTGGAATTGAAGGAAATTTGGATTCTC
GTTATCCCTCACCAAGCATACTTTGATAGCTACCGCTTAAAATGA

Translation (224 aa):
MLHLSAAPPAPPPEVTATARPCLCSVGRRGDGGKMAAAGALERSFVELSGAERERPRHFREFTVCSIGTA
NAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNNAIRLKFQNCSVLPG
GVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSVSWLSAISFISQITLGVTNVVLERCLLELKEIWIL
VIPHQAYFDSYRLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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