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Report for CCDS81604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81604.1 Public Homo sapiens 11 AAMDC 24 110 108 CCDS HistoryNCBI Gene:28971Re-query CCDS DB by CCDS ID:81604.1Re-query CCDS DB by GeneID:28971See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81604.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000527134.5 ENSP00000433281.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527134.5Link to Ensembl Protein Viewer:ENSP00000433281.1Re-query CCDS DB by Nucleotide ID:ENST00000527134Re-query CCDS DB by Protein ID:ENSP00000433281
Original member Current member NCBI NM_001316958.3 NP_001303887.1 Accepted alive Link to Nucleotide Sequence:NM_001316958.3Link to Protein Sequence:NP_001303887.1Re-query CCDS DB by Nucleotide ID:NM_001316958Re-query CCDS DB by Protein ID:NP_001303887Link to BLAST:NP_001303887.1
Original member Current member NCBI NM_001392034.1 NP_001378963.1 Accepted alive Link to Nucleotide Sequence:NM_001392034.1Link to Protein Sequence:NP_001378963.1Re-query CCDS DB by Nucleotide ID:NM_001392034Re-query CCDS DB by Protein ID:NP_001378963Link to BLAST:NP_001378963.1

Chromosomal Locations for CCDS 81604.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 77842497 77842628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77869722 77869817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77876950 77877049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77878702 77878756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77900571 77900601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGACTTCCCCTGAAATTGCTTCCTTATCATGGGGGCAAATGAAAGTAAAAGGCTCTAATACAACCTATA
AGGACTGCAAAGTATGGCCAGGGGGTAGTCGGACTTGGGATTGGAGAGAAACAGGAACTGAGCATTCTCC
TGGTGTGCAGCCTGCAGATGTGAAGGAAGTTGTTGAGAAGGGTGTACAGACTCTTGTGATTGGCCGAGGG
ATGAGTGAGGCCTTGAAGGCTCCAACCCAGCAGCTGCCATCAGGTGTTCATGTCAGGGCTGTGGTACAAT
TCCACCTGGCTACAGCTTCATGGCACATCCTTGAGAGATGCAAAACAGACCAGGAACTAGAACAGCTTGG
TGTTTTCTCAACTTTATTGTGGACAGGAGAAGGGAGCTGGACTGAGCATCAAACATGTCTGTGA

Translation (137 aa):
MTSPEIASLSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVKEVVEKGVQTLVIGRG
MSEALKAPTQQLPSGVHVRAVVQFHLATASWHILERCKTDQELEQLGVFSTLLWTGEGSWTEHQTCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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