NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8381.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8381.1 Public Homo sapiens 11 TAGLN 24 110 108 CCDS HistoryNCBI Gene:6876Re-query CCDS DB by CCDS ID:8381.1Re-query CCDS DB by GeneID:6876See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8381.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278968.10 ENSP00000278968.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000278968.10Link to Ensembl Protein Viewer:ENSP00000278968.6Re-query CCDS DB by Nucleotide ID:ENST00000278968Re-query CCDS DB by Protein ID:ENSP00000278968
Original member Current member EBI ENST00000392951.9 ENSP00000376678.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392951.9Link to Ensembl Protein Viewer:ENSP00000376678.4Re-query CCDS DB by Nucleotide ID:ENST00000392951Re-query CCDS DB by Protein ID:ENSP00000376678
Original member Current member EBI ENST00000530649.5 ENSP00000431941.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530649.5Link to Ensembl Protein Viewer:ENSP00000431941.1Re-query CCDS DB by Nucleotide ID:ENST00000530649Re-query CCDS DB by Protein ID:ENSP00000431941
Original member Current member EBI ENST00000525531.5 ENSP00000432054.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525531.5Link to Ensembl Protein Viewer:ENSP00000432054.1Re-query CCDS DB by Nucleotide ID:ENST00000525531Re-query CCDS DB by Protein ID:ENSP00000432054
Original member Current member EBI ENST00000532870.5 ENSP00000432282.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000532870.5Link to Ensembl Protein Viewer:ENSP00000432282.1Re-query CCDS DB by Nucleotide ID:ENST00000532870Re-query CCDS DB by Protein ID:ENSP00000432282
Original member Current member NCBI NM_001001522.2 NP_001001522.1 Accepted alive Link to Nucleotide Sequence:NM_001001522.2Link to Protein Sequence:NP_001001522.1Re-query CCDS DB by Nucleotide ID:NM_001001522Re-query CCDS DB by Protein ID:NP_001001522Link to BLAST:NP_001001522.1
Original member Current member NCBI NM_003186.5 NP_003177.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003186.5Link to Protein Sequence:NP_003177.2Re-query CCDS DB by Nucleotide ID:NM_003186Re-query CCDS DB by Protein ID:NP_003177Link to BLAST:NP_003177.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001522.1 201 Q01995 201 100% 0 0
NP_003177.2 201 Q01995 201 100% 0 0

Chromosomal Locations for CCDS 8381.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 117203014 117203193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117203307 117203484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117203782 117203884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117204215 117204359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGGCCAACAAGGGTCCTTCCTATGGCATGAGCCGCGAAGTGCAGTCCAAAATCGAGAAGAAGTATGACG
AGGAGCTGGAGGAGCGGCTGGTGGAGTGGATCATAGTGCAGTGTGGCCCTGATGTGGGCCGCCCAGACCG
TGGGCGCTTGGGCTTCCAGGTCTGGCTGAAGAATGGCGTGATTCTGAGCAAGCTGGTGAACAGCCTGTAC
CCTGATGGCTCCAAGCCGGTGAAGGTGCCCGAGAACCCACCCTCCATGGTCTTCAAGCAGATGGAGCAGG
TGGCTCAGTTCCTGAAGGCGGCTGAGGACTATGGGGTCATCAAGACTGACATGTTCCAGACTGTTGACCT
CTTTGAAGGCAAAGACATGGCAGCAGTGCAGAGGACCCTGATGGCTTTGGGCAGCTTGGCAGTGACCAAG
AATGATGGGCACTACCGTGGAGATCCCAACTGGTTTATGAAGAAAGCGCAGGAGCATAAGAGGGAATTCA
CAGAGAGCCAGCTGCAGGAGGGAAAGCATGTCATTGGCCTTCAGATGGGCAGCAACAGAGGGGCCTCCCA
GGCCGGCATGACAGGCTACGGACGACCTCGGCAGATCATCAGTTAG

Translation (201 aa):
MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLY
PDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTK
NDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH