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Report for CCDS8479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8479.1 Public Homo sapiens 11 KCNJ5 24 110 108 CCDS HistoryNCBI Gene:3762Re-query CCDS DB by CCDS ID:8479.1Re-query CCDS DB by GeneID:3762See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8479.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338350.4 ENSP00000339960.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338350.4Link to Ensembl Protein Viewer:ENSP00000339960.4Re-query CCDS DB by Nucleotide ID:ENST00000338350Re-query CCDS DB by Protein ID:ENSP00000339960
Original member Current member EBI ENST00000529694.6 ENSP00000433295.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000529694.6Link to Ensembl Protein Viewer:ENSP00000433295.1Re-query CCDS DB by Nucleotide ID:ENST00000529694Re-query CCDS DB by Protein ID:ENSP00000433295
Original member Current member EBI ENST00000533599.1 ENSP00000434266.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533599.1Link to Ensembl Protein Viewer:ENSP00000434266.1Re-query CCDS DB by Nucleotide ID:ENST00000533599Re-query CCDS DB by Protein ID:ENSP00000434266
Original member Current member NCBI NM_000890.5 NP_000881.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000890.5Link to Protein Sequence:NP_000881.3Re-query CCDS DB by Nucleotide ID:NM_000890Re-query CCDS DB by Protein ID:NP_000881Link to BLAST:NP_000881.3
Original member Current member NCBI NM_001354169.2 NP_001341098.1 Accepted alive Link to Nucleotide Sequence:NM_001354169.2Link to Protein Sequence:NP_001341098.1Re-query CCDS DB by Nucleotide ID:NM_001354169Re-query CCDS DB by Protein ID:NP_001341098Link to BLAST:NP_001341098.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000881.3 419 P48544 419 100% 0 0
NP_001341098.1 419 P48544 419 100% 0 0

Chromosomal Locations for CCDS 8479.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 128911274 128912210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 128916409 128916731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGCTGGCGATTCTAGGAATGCCATGAACCAGGACATGGAGATTGGAGTCACTCCCTGGGACCCCAAGA
AGATTCCAAAACAGGCCCGCGATTATGTCCCCATTGCCACAGACCGTACGCGCCTGCTGGCCGAGGGCAA
GAAGCCACGCCAGCGCTACATGGAGAAGAGTGGCAAGTGCAACGTGCACCACGGCAACGTCCAGGAGACC
TACCGGTACCTGAGTGACCTCTTCACCACCCTGGTGGACCTCAAGTGGCGCTTCAACTTGCTCGTCTTCA
CCATGGTTTACACTGTCACCTGGCTGTTCTTCGGCTTCATTTGGTGGCTCATTGCTTATATCCGGGGTGA
CCTGGACCATGTTGGCGACCAAGAGTGGATTCCTTGTGTTGAAAACCTCAGTGGCTTCGTGTCCGCTTTC
CTGTTCTCCATTGAGACCGAAACAACCATTGGGTATGGCTTCCGAGTCATCACAGAGAAGTGTCCAGAGG
GGATTATACTCCTCTTGGTCCAGGCCATCCTGGGCTCCATCGTCAATGCCTTCATGGTGGGGTGCATGTT
TGTCAAGATCAGCCAGCCCAAGAAGAGAGCGGAGACCCTCATGTTTTCCAACAACGCAGTCATCTCCATG
CGGGACGAGAAGCTGTGCCTCATGTTCCGGGTGGGCGACCTCCGCAACTCCCACATCGTGGAGGCCTCCA
TCCGGGCCAAGCTCATCAAGTCCCGGCAGACCAAAGAGGGGGAGTTCATCCCCCTGAACCAGACAGACAT
CAACGTGGGCTTTGACACGGGCGACGACCGCCTCTTCCTTGTGTCTCCTCTGATCATCTCCCATGAGATC
AACCAGAAGAGCCCTTTCTGGGAGATGTCTCAGGCTCAGCTGCATCAGGAAGAGTTTGAAGTTGTGGTCA
TTCTAGAAGGGATGGTGGAAGCCACAGGCATGACCTGCCAAGCCCGGAGCTCCTACATGGATACAGAGGT
GCTCTGGGGCCACCGATTCACACCAGTCCTCACCTTGGAAAAGGGCTTCTATGAGGTGGACTACAACACC
TTCCATGATACCTATGAGACCAACACACCCAGCTGCTGTGCCAAGGAGCTGGCAGAAATGAAGAGGGAAG
GCCGGCTCCTCCAGTACCTCCCCAGCCCCCCACTGCTGGGGGGCTGTGCTGAGGCAGGGCTGGATGCAGA
GGCTGAGCAGAATGAAGAAGATGAGCCCAAGGGGCTGGGTGGGTCCAGGGAGGCCAGGGGCTCGGTGTGA

Translation (419 aa):
MAGDSRNAMNQDMEIGVTPWDPKKIPKQARDYVPIATDRTRLLAEGKKPRQRYMEKSGKCNVHHGNVQET
YRYLSDLFTTLVDLKWRFNLLVFTMVYTVTWLFFGFIWWLIAYIRGDLDHVGDQEWIPCVENLSGFVSAF
LFSIETETTIGYGFRVITEKCPEGIILLLVQAILGSIVNAFMVGCMFVKISQPKKRAETLMFSNNAVISM
RDEKLCLMFRVGDLRNSHIVEASIRAKLIKSRQTKEGEFIPLNQTDINVGFDTGDDRLFLVSPLIISHEI
NQKSPFWEMSQAQLHQEEFEVVVILEGMVEATGMTCQARSSYMDTEVLWGHRFTPVLTLEKGFYEVDYNT
FHDTYETNTPSCCAKELAEMKREGRLLQYLPSPPLLGGCAEAGLDAEAEQNEEDEPKGLGGSREARGSV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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