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Report for CCDS91286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91286.1 Public Homo sapiens 10 SH2D4B 24 110 108 CCDS HistoryNCBI Gene:387694Re-query CCDS DB by CCDS ID:91286.1Re-query CCDS DB by GeneID:387694See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 91286.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000646907.2 ENSP00000494732.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000646907.2Link to Ensembl Protein Viewer:ENSP00000494732.1Re-query CCDS DB by Nucleotide ID:ENST00000646907Re-query CCDS DB by Protein ID:ENSP00000494732
Original member Current member NCBI NM_001388272.1 NP_001375201.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001388272.1Link to Protein Sequence:NP_001375201.1Re-query CCDS DB by Nucleotide ID:NM_001388272Re-query CCDS DB by Protein ID:NP_001375201Link to BLAST:NP_001375201.1

Chromosomal Locations for CCDS 91286.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80538332 80538515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80570154 80570316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80571431 80571578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80588630 80588777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80603579 80603795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80609424 80609551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80634285 80634505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80643993 80644085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGCTGCAGCAGATCCTGCACGACATGTACATCGACCCCGAGCTCCTTGCCGAGCTCAGCGATGTGCAGA
AGCACATCCTCTTCTACAAAATGCGGGAGGAGCAGCTGAGGCGCTGGAAGGAGCGGGAGACTTGGGAGGC
CCTGGCCCAGGACGAGGGTCTCAGGCCTCCAAAGACCAAGCGAGCAGCGAGTGACAAGCACATCCAATGG
CTCCTAGGGGCAGATGGCGAGGTCTGGGTCTGGATCATGGGAGAAGGCCCTGGTGACAAGCCCTACGAAG
AGATCTCTGAGGAGCTGATTGCAGAGAGGGCGCGGCTGCAGGCACAGAGGGAAGCTGAGGAGCTCTGGAG
ACAGAAGGAGGCAGAGATCACCAAGAAGTTCCGGGATGCTCTGGCCAATGAGAAAGCCCGGATCTTGGCG
GAGAAGTGGAAAGTGGAGATGGAAGACCGCAAGGCTGCCAAAGTCCTGGAGGAACGCATCCACGAGGAAT
TCAAGAGGAAAGAGGAAGAGGAGAGGAAGCGAGGAGAAGAGCAGATTCGCCTCCAGGAAGAGCAGAGGGC
GAAGGAGCTCTACTGGACCCTGAAGCAGGCTCAGCTGCATTGCCAAGCCAGTGAGAAAGAGGAGCGAGAG
TGGGAAGAACAGTTGCGCCGGTCCAAGGCGGCTGATGAGGAGAGGAGCCGCCGAGCCCAGCGCGCCCGGG
ACGAGTACCGACACCACTCGCTCCGTGCTATCCAGAAGGGCACGGTCGCTGGCCTCAGCTCCATGTTCCG
GGAGCTTGGCCAGAGCCATGAGCAGGAGGCAAGACTCTACCACCACCTCCCCGACCCGGGTCTGCCGCAG
CCCCTTGCCCTGCCGGTCAGCAGGACCTGGGAGCGCCCGCTGCGCCCAGTCTCCAGAGATGTCATCGTCC
GCTGGTTTAAGGAGGAGCAGCTGCCTCGCCGAGCTGGCTTCGAGAGGAACACCAAGTTCATCGCCCCCTG
GTTCCATGGAATTATTAGCCGAGAAGATGCAGAAGCTCTCCTGGAGAACATGACTGAGGGAGCATTCCTG
GTCCGGGTCAGTGAGAAAATCTGGGGTTACACCCTCTCCTACCGCCTGCAGAAAGGGTTCAAACACTTTC
TTGTGGATGCTTCTGGGGATTTTTACAGCTTCCTGGGAGTGGACCCCAATCGCCATGCAACGCTCACGGA
TCTCGTTGATTTCCATAAGGAGGAAATTATCACTGTTTCAGGAGGAGAGTTACTTCAGGAACCCTGCGGA
CAGAGGGACAGCCCACCAGACTACCATCTGTTGTTTGAATAA

Translation (433 aa):
MLQQILHDMYIDPELLAELSDVQKHILFYKMREEQLRRWKERETWEALAQDEGLRPPKTKRAASDKHIQW
LLGADGEVWVWIMGEGPGDKPYEEISEELIAERARLQAQREAEELWRQKEAEITKKFRDALANEKARILA
EKWKVEMEDRKAAKVLEERIHEEFKRKEEEERKRGEEQIRLQEEQRAKELYWTLKQAQLHCQASEKEERE
WEEQLRRSKAADEERSRRAQRARDEYRHHSLRAIQKGTVAGLSSMFRELGQSHEQEARLYHHLPDPGLPQ
PLALPVSRTWERPLRPVSRDVIVRWFKEEQLPRRAGFERNTKFIAPWFHGIISREDAEALLENMTEGAFL
VRVSEKIWGYTLSYRLQKGFKHFLVDASGDFYSFLGVDPNRHATLTDLVDFHKEEIITVSGGELLQEPCG
QRDSPPDYHLLFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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