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Report for CCDS91400.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91400.1 Public Homo sapiens 11 GATD1 24 110 108 CCDS HistoryNCBI Gene:347862Re-query CCDS DB by CCDS ID:91400.1Re-query CCDS DB by GeneID:347862See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91400.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000526325.5 ENSP00000433322.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000526325.5Link to Ensembl Protein Viewer:ENSP00000433322.1Re-query CCDS DB by Nucleotide ID:ENST00000526325Re-query CCDS DB by Protein ID:ENSP00000433322
Current member NCBI NM_001410955.1 NP_001397884.1 Accepted alive Link to Nucleotide Sequence:NM_001410955.1Link to Protein Sequence:NP_001397884.1Re-query CCDS DB by Nucleotide ID:NM_001410955Re-query CCDS DB by Protein ID:NP_001397884Link to BLAST:NP_001397884.1

Chromosomal Locations for CCDS 91400.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 771357 771467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 772427 772521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 773522 773629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 774008 774113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 775066 775142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 777399 777462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGCGTCCGAGCGGCTCCCTAACAGGCCCGCCTGTCTGCTCGTGGCCAGCGGCGCCGCCGAAGGTGTGT
CGGCCCAGTCCTTCCTCCACTGTTTCACGATGGCCAGCACCGCCTTCAACCTGCAGGTGGCCACCCCTGG
GGGGAAAGCCATGGAATTTGTGGATGTGACTGAGAGCAATGCACGCTGGGTGCAAGACTTCCGCCTCAAG
GCTTACGCCAGCCCCGCCAAGCTCGAGTCCATCGATGGTGCCCGGTACCATGCCCTCCTGATCCCCAGCT
GTCCTGGGGCCCTGACCGACCTGGCCAGCAGTGGCTCCCTGGCCCGTATCCTGCAGCACTTCCACTCTGA
GAGCAAACCCATCTGCGCCGTCGGCCACGGTGTCGCCGCCCTGTGCTGTGCCACCAACGAGGACAGATCC
TGGGTGTTCGACAGCTACAGCCTGACAGGGGGCCTGGGCCTGTCTCAGGAGCCCCCACCCCGCTCCCGCA
GCCCTCTGTGTGTGAGCTCGTCAGGGCCCCCGGCTTCGCCCGCCTGCCGCTCGTGGTGGAGGACTTCGTG
A

Translation (186 aa):
MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESNARWVQDFRLK
AYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFHSESKPICAVGHGVAALCCATNEDRS
WVFDSYSLTGGLGLSQEPPPRSRSPLCVSSSGPPASPACRSWWRTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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