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Report for CCDS92228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92228.1 Public Homo sapiens 17 CTNS 24 110 108 CCDS HistoryNCBI Gene:1497Re-query CCDS DB by CCDS ID:92228.1Re-query CCDS DB by GeneID:1497See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92228.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000673669.1 ENSP00000501123.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673669.1Link to Ensembl Protein Viewer:ENSP00000501123.1Re-query CCDS DB by Nucleotide ID:ENST00000673669Re-query CCDS DB by Protein ID:ENSP00000501123
Original member Current member NCBI NM_001374493.1 NP_001361422.1 Accepted alive Link to Nucleotide Sequence:NM_001374493.1Link to Protein Sequence:NP_001361422.1Re-query CCDS DB by Nucleotide ID:NM_001374493Re-query CCDS DB by Protein ID:NP_001361422Link to BLAST:NP_001361422.1
Original member Current member NCBI NM_001374494.1 NP_001361423.1 Accepted alive Link to Nucleotide Sequence:NM_001374494.1Link to Protein Sequence:NP_001361423.1Re-query CCDS DB by Nucleotide ID:NM_001374494Re-query CCDS DB by Protein ID:NP_001361423Link to BLAST:NP_001361423.1
Original member Current member NCBI NM_001374495.1 NP_001361424.1 Accepted alive Link to Nucleotide Sequence:NM_001374495.1Link to Protein Sequence:NP_001361424.1Re-query CCDS DB by Nucleotide ID:NM_001374495Re-query CCDS DB by Protein ID:NP_001361424Link to BLAST:NP_001361424.1
Original member Current member NCBI NM_001374496.1 NP_001361425.1 Accepted alive Link to Nucleotide Sequence:NM_001374496.1Link to Protein Sequence:NP_001361425.1Re-query CCDS DB by Nucleotide ID:NM_001374496Re-query CCDS DB by Protein ID:NP_001361425Link to BLAST:NP_001361425.1

Chromosomal Locations for CCDS 92228.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 3655333 3655352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3656487 3656586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3656676 3656795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3658005 3658175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3659858 3659975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3660236 3660369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGAATTGGAGGCGGAAAAGTGTCATTGGTCTGAGCTTCGACTTCGTGGCTCTGAACCTGACGGGCTTCG
TG
GCCTACAGTGTATTCAACATCGGCCTCCTCTGGGTGCCCTACATCAAGGAGCAGTTTCTCCTCAAATA
C
CCCAACGGAGTGAACCCCGTGAACAGCAACGACGTCTTCTTCAGCCTGCACGCGGTTGTCCTCACGCTG
ATC
ATCATCGTGCAGTGCTGCCTGTATGAGCGCGGTGGCCAGCGCGTGTCCTGGCCTGCCATCGGCTTCC
TG
GTGCTCGCGTGGCTCTTCGCATTTGTCACCATGATCGTGGCTGCAGTGGGAGTGACCACGTGGCTGCA
G
TTTCTCTTCTGCTTCTCCTACATCAAGCTCGCAGTCACGCTGGTCAAGTATTTTCCACAGGCCTACATG
AAC
TTTTACTACAAAAGCACTGAGGGCTGGAGCATTGGCAACGTGCTCCTGGACTTCACCGGGGGCAGCT
TC
AGCCTCCTGCAGATGTTCCTCCAGTCCTACAACAACGACCAGTGGACGCTGATCTTCGGAGACCCAAC
C
AAGTTTGGACTCGGGGTCTTCTCCATCGTCTTCGACGTCGTCTTCTTCATCCAGCACTTCTGTTTGTAC
AGA
AAGAGACCGGGGTATGACCAGCTGAACTAG


Translation (220 aa):
MNWRRKSVIGLSFDFVALNLTGFVAYSVFNIGLLWVPYIKEQFLLKYPNGVNPVNSNDVFFSLHAVVLTL
I
IIVQCCLYE
RGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYM
N
FYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNN
DQWTLIFGDPTKFGLGVFSIVFDVVFFIQHFCLY
R
KRPGYDQLN




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser