NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS92431.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92431.1 Public Homo sapiens 18 MTCL1 24 110 108 CCDS HistoryNCBI Gene:23255Re-query CCDS DB by CCDS ID:92431.1Re-query CCDS DB by GeneID:23255See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 92431.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000695636.1 ENSP00000512073.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000695636.1Link to Ensembl Protein Viewer:ENSP00000512073.1Re-query CCDS DB by Nucleotide ID:ENST00000695636Re-query CCDS DB by Protein ID:ENSP00000512073
Original member Current member NCBI NM_001395333.1 NP_001382262.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001395333.1Link to Protein Sequence:NP_001382262.1Re-query CCDS DB by Nucleotide ID:NM_001395333Re-query CCDS DB by Protein ID:NP_001382262Link to BLAST:NP_001382262.1

Chromosomal Locations for CCDS 92431.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 8705661 8706713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8718424 8718648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8720338 8720496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8777833 8777892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8783530 8784843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8785936 8786091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8792998 8793120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8796232 8796462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8798097 8798291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8806893 8807060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8812979 8813233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8818963 8819259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8821467 8821498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8824699 8826232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8831607 8831840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6036 nt):
ATGGAGACACTGAACGGCCCCGCGGGCGGAGGTGCCCCGGACGCGAAGCTGCAGCCGCCCGGCCAGCACC
ACCGCCACCACCACCTCCACCCGGTGGCCGAAAGGCGGCGGCTGCACCGTGCGCCCTCGCCCGCCAGACC
CTTCCTCAAGGACCTGCACGCCCGGCCCGCCGCGCCCGGCCCGGCCGTCCCCTCCTCGGGCCGAGCCCCG
GCTCCCGCCGCCCCGCGCTCGCCCAACCTCGCGGGCAAAGCGCCGCCCTCGCCGGGGTCCCTGGCCGCGC
CCGGCCGCCTCTCTCGGCGCAGTGGCGGCGTCCCGGGCGCGAAGGACAAGCCCCCGCCGGGCGCCGGGGC
CAGAGCGGCGGGCGGTGCCAAGGCTGCCCTGGGAAGCAGGAGGGCGGCGCGCGTGGCGCCCGCGGAGCCG
CTGTCCCGGGCTGGGAAGCCTCCCGGAGCCGAGCCGCCGTCTGCCGCTGCCAAGGGCCGCAAAGCCAAGC
GCGGCTCCCGGGCGCCACCCGCCCGCACCGTCGGCCCCCCGACCCCGGCCGCCCGGATCCCTGCCGTGAC
CCTCGCGGTGACCTCGGTGGCCGGGTCCCCGGCCCGCTGCTCGCGCATCAGCCACACGGACAGCAGCTCC
GACCTCTCTGACTGCCCCTCCGAACCCCTGTCCGACGAGCAGCGCCTGCTCCCTGCCGCCAGCAGCGACG
CCGAATCCGGCACGGGCTCCAGCGACCGTGAACCCCCACGAGGAGCGCCGACGCCGAGCCCCGCAGCCCG
AGGAGCGCCGCCGGGCAGCCCCGAGCCCCCAGCGCTCCTCGCCGCGCCCCTCGCCGCGGGCGCCTGTCCC
GGGGGCCGGAGCATCCCGAGCGGGGTTTCGGGGGGTTTCGCGGGGCCCGGCGTGGCGGAGGATGTCCGGG
GGCGCTCGCCACCGGAGCGACCAGTCCCCGGGACCCCCAAGGAGCCCAGCCTGGGCGAGCAGTCTCGGCT
CGTGCCAGCGGCGGAGGAAGAAGAGCTGCTGCGGGAGATGGAGGAGCTGCGCTCGGAGAACGACTATCTC
AAGGATGAGTTAGATGAACTCCGTGCTGAGATGGAAGAGATGAGAGACAGTTATTTAGAGGAAGATGTTT
ACCAGCTGCAGGAACTTCGGCGAGAACTGGACCGCGCTAATAAAAACTGCCGAATCCTGCAGTACCGTCT
TCGGAAAGCCGAGCAGAAAAGCCTGAAAGTGGCTGAGACGGGTCAGGTGGATGGTGAGCTTATTCGAAGC
CTGGAGCAGGACTTGAAGGTAGCCAAAGATGTATCTGTCAGATTGCACCACGAACTTAAGACGGTGGAGG
AAAAGCGCGCTAAAGCTGAGGATGAAAACGAAACTCTCCGACAGCAGATGATTGAAGTGGAAATATCCAA
ACAGGCCCTCCAGAATGAGCTGGAGAGACTGAAAGAGAGTTCCCTAAAAAGAAGAAGCACTCGGGAAATG
TACAAGGAGAAGAAAACCTTTAACCAGGATGACAGTGCCGATTTGAGGTGCCAGCTCCAGTTTGCCAAAG
AGGAAGCCTTCCTGATGCGCAAAAAGATGGCCAAGCTAGGAAGGGAGAAGGACGAGCTGGAGCAGGAGCT
CCAGAAGTACAAGTCCCTCTATGGGGATGTGGACAGTCCCCTGCCCACGGGGGAAGCAGGCGGGCCCCCC
AGCACCCGGGAGGCCGAGCTGAAGCTGCGGCTAAAGCTGGTGGAGGAGGAAGCCAACATCTTGGGCCGGA
AGATCGTGGAGCTGGAGGTGGAGAACCGTGGCCTCAAGGCAGAGATGGAGGACATGCGGGGCCAGCAGGA
GCGGGAGGGCCCGGGTCGGGACCACGCACCCAGCATTCCTACCTCACCCTTCGGTGACTCCCTGGAGTCC
TCCACTGAGCTCCGCCGCCACCTGCAGTTTGTAGAAGAGGAAGCGGAGTTGCTCCGGAGGTCCATCTCCG
AGATCGAAGACCACAACCGGCAACTGACCCACGAGCTCAGCAAGTTTAAGTTTGAGCCTCCCCGGGAGCC
GGGCTGGCTAGGAGAGGGTGCAAGTCCTGGTGCCGGGGGTGGGGCCCCCCTGCAGGAGGAGCTGAAGTCA
GCCAGGCTGCAGATCAGCGAGCTCAGCGGCAAGGTGCTCAAACTGCAGCACGAGAACCACGCGCTGCTGT
CCAACATCCAGCGCTGCGACCTGGCAGCCCACCTGGGGCTGCGTGCCCCCAGTCCCCGGGACAGCGATGC
CGAGAGTGATGCGGGCAAGAAGGAGAGTGATGGGGAGGAGAGCCGCCTGCCCCAGCCCAAGCGGGAAGGG
CCTGTTGGCGGGGAGAGTGACTCGGAGGAAATGTTTGAGAAGACGTCGGGCTTCGGGAGCGGGAAGCCAT
CGGAGGCCAGCGAGCCATGCCCCACGGAGCTCCTGAAGGCCCGGGAGGACTCTGAGTACCTAGTGACCCT
AAAACACGAGGCCCAGCGGCTAGAGCGGACGGTGGAGCGCCTCATCACGGACACCGACAGCTTCCTCCAT
GATGCGGGGCTGCGGGGTGGTGCGCCCTTACCGGGGCCTGGCCTCCAGGGCGAAGAGGAGCAGGGTGAGG
GGGACCAGCAGGAGCCCCAGCTGCTGGGGACCATCAACGCCAAGATGAAGGCTTTCAAGAAAGAGCTGCA
GGCCTTCCTGGAGCAGGTGAACCGCATTGGGGATGGCCTATCCCCCTTGCCCCACCTCACAGAGTCCTCT
AGCTTCCTCTCCACTGTGACTTCCGTGTCCCGGGACTCCCCCATCGGGAACCTGGGGAAGGAGCTGGGCC
CAGACTTGCAGTCCAGACTGAAAGAGCAGCTGGAGTGGCAGCTCGGGCCGGCCCGAGGGGACGAGCGGGA
GAGCCTGCGCCTCCGAGCCGCGCGGGAGCTGCACCGCCGCGCAGACGGGGACACCGGGAGCCACGGGCTG
GGAGGCCAGACCTGCTTCAGCCTGGAGCTCAGGGGCCCCCCCGTTTTACCTGAGCAGAGTGTATCCATAG
AGGAGCTACAGGGTCAGCTCGTGCAGGCGGCCAGACTGCATCAAGAGGAGACAGAGACATTTACAAACAA
GATCCATAAGATGGAGGAGGAGCACCTCTATGCCTTGAGGTGGAAAGAACTGGAAATGCACAGCCTGGCT
TTGCAAAACACCCTCCATGAGCGAACCTGGAGTGATGAGAAGAATCTGATGCAGCAGGAGCTCCGGTCCT
TGAAGCAGAACATTTTCCTCTTCTACGTCAAACTCAGGTGGCTGCTGAAACACTGGCGGCAAGGGAAGCA
GATGGAGGAGGAAGGAGAGGAGTTCACTGAGGGTGAACATCCAGAGACCCTCTCCAGGCTCGGGGAGCTT
GGAGTCCAGGGGGGTCACCAGGCGGATGGCCCAGACCACGACAGTGACCGAGGCTGTGGCTTTCCAGTGG
GGGAGCACTCCCCACACTCCCGGGTGCAGATTGGAGATCACAGCTTGCGGCTGCAGACCGCGGACAGGGG
ACAGCCCCACAAACAGGTGGTGGAAAACCAGCAGCTGTTCAGCGCCTTCAAGGCCTTGCTGGAGGACTTC
CGTGCGGAGCTGCGGGAGGATGAGCGTGCCCGACTACGGCTGCAGCAGCAATATGCCAGCGACAAGGCGG
CCTGGGACGTGGAGTGGGCCGTGCTCAAGTGCCGTCTGGAACAGCTGGAAGAGAAGACTGAGAACAAGTT
GGGAGAACTAGGCTCCTCCGCTGAGAGCAAGGGGGCCTTGAAGAAGGAGAGAGAGGTGCACCAGAAGCTC
CTGGCAGACAGTCACAGCCTGGTCATGGACCTGCGCTGGCAGATCCATCACAGCGAGAAGAACTGGAACC
GGGAGAAGGTGGAACTTCTCGACCGCCTGGACAGAGATCGGCAGGAGTGGGAGCGGCAGAAGAAGGAATT
CTTGTGGAGGATAGAGCAGTTGCAGAAAGAGAACAGTCCCCGGAGAGGTGGCAGTTTCCTCTGTGATCAA
AAAGACGGCAACGTTCGCCCCTTTCCCCACCAGGGAAGCCTCCGCATGCCCCGTCCAGTGGCCATGTGGC
CTTGTGCAGATGCTGACTCCATCCCGTTTGAAGACCGGCCGCTGTCCAAGCTGAAGGAGTCGGACAGGTG
CTCGGCCAGTGAGAATCTCTACCTGGATGCCTTGTCCCTGGATGACGAGCCAGAAGAGCCACCAGCCCAC
AGGCCCGAGAGGGAGTTCAGGAACCGCCTCCCTGAGGAAGAAGAAAATCACAAAGGAAATCTTCAAAGGG
CGGTGTCCGTGTCCTCCATGTCTGAGTTCCAGCGTCTAATGGACATCTCCCCCTTCCTGCCTGAGAAGGG
CCTGCCGTCCACCAGCAGCAAGGAGGATGTCACCCCACCCCTGTCTCCAGACGACCTCAAGTACATCGAG
GAGTTCAACAAGAGCTGGGACTACACACCCAACAGGGGCCACAATGGTGGGGGGCCGGACCTTTGGGCCG
ACAGGACCGAGGTGGGGCGGGCAGGGCACGAGGACAGCACAGAGCCTTTCCCCGACTCCTCCTGGTACCT
AACCACAAGTGTCACCATGACCACGGACACCATGACCAGCCCAGAGCACTGCCAGAAGCAGCCACTGCGG
AGCCACGTCCTCACCGAGCAGTCGGGGTTGCGCGTGTTACACAGCCCGCCTGCCGTGCGCAGGGTCGACA
GCATCACGGCGGCAGGTGGTGAGGGTCCCTTTCCCACAAGCAGAGCCAGAGGGAGCCCGGGAGACACCAA
GGGAGGCCCTCCAGAACCCATGCTCAGCAGGTGGCCTTGCACCTCCCCCAGGCACTCCCGGGACTATGTG
GAGGGGGCACGGCGCCCCCTTGATAGTCCCCTCTGTACCTCCCTGGGGTTTGCCTCCCCACTGCACAGCC
TGGAGATGTCCAAGAACTTGAGTGATGACATGAAGGAGGTGGCCTTCTCTGTCAGGAATGCCATCTGCTC
CGGCCCTGGCGAGCTGCAAGTCAAGGACATGGCCTGCCAGACCAATGGGTCCCGGACGATGGGGACCCAG
ACTGTTCAGACCATCAGTGTGGGCTTGCAGACTGAAGCCCTGCGTGGCAGCGGTGTCACCAGCAGCCCCC
ACAAGTGTCTCACTCCAAAGGCTGGGGGCGGTGCTACACCCGTGTCGTCTCCTTCCCGGAGCCTTAGGAG
CAGACAGGTGGCCCCTGCCATCGAGAAGGTGCAGGCCAAGTTTGAACGCACATGCTGCTCCCCCAAGTAT
GGTTCTCCCAAGCTGCAGAGGAAGCCCCTCCCCAAAGCCGACCAGCCAAATAACAGGACGTCACCAGGGA
TGGCCCAGAAAGGGTACAGTGAGTCAGCCTGGGCCCGCTCCACCACCACAAGGGAGAGCCCCGTGCACAC
CACCATTAATGATGGCCTCTCCAGCCTCTTCAACATCATTGACCACAGCCCCGTGGTGCAGGACCCCTTC
CAGAAGGGGCTGCGGGCCGGCAGTCGGTCTCGCTCAGCAGAGCCCCGACCAGAGCTGGGCCCAGGCCAGG
AAACAGGCACCAATTCCCGAGGAAGGTCGCCTAGCCCCATTGGGGTGGGGTCAGAGATGTGCAGGGAGGA
AGGGGGAGAGGGCACGCCAGTGAAGCAGGACTTATCTGCTCCCCCTGGCTACACGCTCACTGAGAACGTG
GCCCGGATCCTCAACAAGAAGCTGCTGGAACATGCCTTAAAGGAGGAGAGGAGGCAGGCTGCCCACGGGC
CCCCGGGTCTCCACAGTGACAGCCACTCGCTGGGGGACACAGCCGAGCCAGGGCCCATGGAGGAACTACC
TTGTTCTGCACTAGCTCCATCCCTAGAGCCCTGCTTCTCCAGGCCCGAGAGACCAGCAAACCGTCGCCCT
CCGTCCCGTTGGGCCCCACATTCCCCCACTGCCTCACAGCCTCAGTCACCCGGAGACCCGACGTCCTTGG
AGGAGCATGGTGGCGAGGAGCCGCCCGAGGAGCAGCCACACCGAGATGCAAGCTTGCATGGATTATCACA
GTATAATTCACTGTAA

Translation (2011 aa):
METLNGPAGGGAPDAKLQPPGQHHRHHHLHPVAERRRLHRAPSPARPFLKDLHARPAAPGPAVPSSGRAP
APAAPRSPNLAGKAPPSPGSLAAPGRLSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEP
LSRAGKPPGAEPPSAAAKGRKAKRGSRAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCSRISHTDSSS
DLSDCPSEPLSDEQRLLPAASSDAESGTGSSDREPPRGAPTPSPAARGAPPGSPEPPALLAAPLAAGACP
GGRSIPSGVSGGFAGPGVAEDVRGRSPPERPVPGTPKEPSLGEQSRLVPAAEEEELLREMEELRSENDYL
KDELDELRAEMEEMRDSYLEEDVYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRS
LEQDLKVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREM
YKEKKTFNQDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPP
STREAELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQEREGPGRDHAPSIPTSPFGDSLES
STELRRHLQFVEEEAELLRRSISEIEDHNRQLTHELSKFKFEPPREPGWLGEGASPGAGGGAPLQEELKS
ARLQISELSGKVLKLQHENHALLSNIQRCDLAAHLGLRAPSPRDSDAESDAGKKESDGEESRLPQPKREG
PVGGESDSEEMFEKTSGFGSGKPSEASEPCPTELLKAREDSEYLVTLKHEAQRLERTVERLITDTDSFLH
DAGLRGGAPLPGPGLQGEEEQGEGDQQEPQLLGTINAKMKAFKKELQAFLEQVNRIGDGLSPLPHLTESS
SFLSTVTSVSRDSPIGNLGKELGPDLQSRLKEQLEWQLGPARGDERESLRLRAARELHRRADGDTGSHGL
GGQTCFSLELRGPPVLPEQSVSIEELQGQLVQAARLHQEETETFTNKIHKMEEEHLYALRWKELEMHSLA
LQNTLHERTWSDEKNLMQQELRSLKQNIFLFYVKLRWLLKHWRQGKQMEEEGEEFTEGEHPETLSRLGEL
GVQGGHQADGPDHDSDRGCGFPVGEHSPHSRVQIGDHSLRLQTADRGQPHKQVVENQQLFSAFKALLEDF
RAELREDERARLRLQQQYASDKAAWDVEWAVLKCRLEQLEEKTENKLGELGSSAESKGALKKEREVHQKL
LADSHSLVMDLRWQIHHSEKNWNREKVELLDRLDRDRQEWERQKKEFLWRIEQLQKENSPRRGGSFLCDQ
KDGNVRPFPHQGSLRMPRPVAMWPCADADSIPFEDRPLSKLKESDRCSASENLYLDALSLDDEPEEPPAH
RPEREFRNRLPEEEENHKGNLQRAVSVSSMSEFQRLMDISPFLPEKGLPSTSSKEDVTPPLSPDDLKYIE
EFNKSWDYTPNRGHNGGGPDLWADRTEVGRAGHEDSTEPFPDSSWYLTTSVTMTTDTMTSPEHCQKQPLR
SHVLTEQSGLRVLHSPPAVRRVDSITAAGGEGPFPTSRARGSPGDTKGGPPEPMLSRWPCTSPRHSRDYV
EGARRPLDSPLCTSLGFASPLHSLEMSKNLSDDMKEVAFSVRNAICSGPGELQVKDMACQTNGSRTMGTQ
TVQTISVGLQTEALRGSGVTSSPHKCLTPKAGGGATPVSSPSRSLRSRQVAPAIEKVQAKFERTCCSPKY
GSPKLQRKPLPKADQPNNRTSPGMAQKGYSESAWARSTTTRESPVHTTINDGLSSLFNIIDHSPVVQDPF
QKGLRAGSRSRSAEPRPELGPGQETGTNSRGRSPSPIGVGSEMCREEGGEGTPVKQDLSAPPGYTLTENV
ARILNKKLLEHALKEERRQAAHGPPGLHSDSHSLGDTAEPGPMEELPCSALAPSLEPCFSRPERPANRRP
PSRWAPHSPTASQPQSPGDPTSLEEHGGEEPPEEQPHRDASLHGLSQYNSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH