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Report for CCDS93733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93733.1 Public Homo sapiens 5 TNPO1 24 110 108 CCDS HistoryNCBI Gene:3842Re-query CCDS DB by CCDS ID:93733.1Re-query CCDS DB by GeneID:3842See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93733.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000679378.1 ENSP00000506620.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679378.1Link to Ensembl Protein Viewer:ENSP00000506620.1Re-query CCDS DB by Nucleotide ID:ENST00000679378Re-query CCDS DB by Protein ID:ENSP00000506620
Original member Current member NCBI NM_001364294.3 NP_001351223.1 Accepted alive Link to Nucleotide Sequence:NM_001364294.3Link to Protein Sequence:NP_001351223.1Re-query CCDS DB by Nucleotide ID:NM_001364294Re-query CCDS DB by Protein ID:NP_001351223Link to BLAST:NP_001351223.1

Chromosomal Locations for CCDS 93733.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 72848394 72848498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72851244 72851319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72855774 72855923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72861808 72861914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72865596 72865729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72872639 72872720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72875615 72875737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72877228 72877346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72882467 72882527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72883064 72883232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72887070 72887222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72888078 72888303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72889786 72889957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72891810 72891896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72893139 72893246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72893377 72893535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72893616 72893703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72896458 72896556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72900006 72900081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72900974 72901073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72903709 72903783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72905303 72905410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2577 nt):
ATGGAGTATGAGTGGAAACCTGACGAGCAAGGGCTTCAGCAAATCCTGCAGCTGTTGAAGGAGTCCCAGT
CCCCAGACACCACCATCCAGAGAACCGTGCAACAAAAACTGGAACAACTTAATCAGTATCCAGACTTTAA
CAACTACTTGATTTTTGTTCTTACAAAATTAAAATCTGAAGATGAACCCACAAGATCATTGAGTGGTCTT
ATCTTGAAGAATAATGTGAAAGCACACTTTCAGAACTTCCCAAATGGTGTAACAGACTTTATTAAAAGTG
AATGTTTAAATAATATTGGTGACTCCTCTCCTCTGATTAGAGCCACTGTTGGTATTTTGATCACAACTAT
AGCCTCCAAGGGAGAATTGCAGAATTGGCCTGACCTCTTACCAAAACTCTGTAGCCTGTTGGATTCTGAA
GATTATAATACCTGTGAGGGAGCATTTGGTGCCCTTCAGAAGATTTGTGAAGATTCTGCTGAGATTTTAG
ACAGTGATGTTTTAGATCGTCCTCTCAACATCATGATTCCCAAATTTTTACAGTTCTTCAAGCATAGTAG
TCCAAAAATAAGGTCTCACGCTGTTGCATGTGTCAATCAGTTTATCATCAGTAGGACTCAAGCTCTAATG
TTGCACATTGATTCTTTTATTGAGAATCTCTTTGCATTAGCTGGTGATGAAGAACCAGAGGTACGGAAAA
ATGTGTGCCGAGCACTTGTGATGTTGCTCGAAGTTCGAATGGATCGCCTGCTTCCTCACATGCATAATAT
AGTTGAGTACATGCTACAGAGGACTCAAGATCAAGATGAAAATGTGGCTTTAGAAGCCTGTGAATTTTGG
CTAACTTTAGCTGAACAGCCAATATGCAAAGATGTACTCGTAAGGCATCTTCCTAAGTTGATTCCTGTGT
TAGTGAATGGCATGAAGTACTCAGACATAGATATTATCCTACTTAAGGGTGATGTTGAAGAAGACGAAAC
GATTCCTGATAGTGAACAGGATATACGGCCACGTTTTCACCGATCGAGGACGGTGGCTCAGCAGCATGAT
GAAGATGGAATTGAAGAGGAAGATGATGATGATGATGAAATTGATGATGATGATACAATTTCTGACTGGA
ATCTAAGAAAATGTTCTGCTGCTGCCCTGGATGTTCTTGCAAATGTGTATCGTGATGAACTGCTGCCACA
TATTTTGCCCCTTTTGAAAGAATTACTTTTTCATCATGAATGGGTTGTTAAAGAATCAGGCATTTTGGTT
TTAGGAGCAATTGCTGAAGGTTGCATGCAGGGCATGATTCCATACTTGCCTGAGCTTATTCCTCACCTTA
TTCAGTGCCTCTCTGATAAAAAGGCTCTTGTGCGTTCCATAACATGCTGGACTCTTAGCCGCTATGCACA
CTGGGTGGTCAGCCAGCCGCCAGACACGTACCTGAAGCCATTAATGACAGAATTGCTAAAGCGCATCCTG
GACAGCAACAAGAGAGTACAAGAAGCTGCCTGCAGTGCCTTTGCTACCCTAGAAGAGGAGGCTTGTACAG
AACTTGTTCCTTACCTTGCTTATATACTTGATACCCTGGTCTTTGCATTTAGTAAATACCAGCATAAGAA
CCTGCTCATTCTTTACGATGCCATAGGAACATTAGCAGATTCAGTAGGACATCATTTAAACAAACCAGAA
TATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAACATGTTAAAGGATGAAGATAAAGATCTCT
TCCCTTTACTTGAGTGCCTATCTTCAGTTGCCACAGCACTGCAGTCTGGATTCCTTCCGTACTGTGAACC
TGTGTATCAGCGTTGTGTAAACCTAGTACAGAAGACTCTTGCACAAGCCATGCTAAACAATGCTCAACCA
GATCAATATGAAGCTCCAGATAAAGATTTTATGATAGTGGCTCTTGATTTACTGAGTGGCCTGGCTGAAG
GACTTGGAGGCAACATTGAACAGCTGGTAGCCCGAAGTAACATCCTGACACTAATGTATCAGTGCATGCA
GGATAAAATGCCAGAAGTTCGACAGAGTTCTTTTGCCCTGTTAGGTGACCTCACAAAAGCTTGCTTTCAG
CATGTTAAGCCTTGTATAGCTGATTTCATGCCAATATTGGGAACCAACCTAAATCCAGAATTCATTTCAG
TCTGCAACAATGCCACATGGGCAATTGGAGAAATCTCCATTCAAATGGCAATAACAATTGGTCGTCTTGG
TTACGTTTGTCCTCAAGAGGTGGCCCCCATGCTACAGCAGTTTATAAGACCCTGGTGCACCTCTCTGAGA
AACATAAGAGACAATGAGGAAAAGGATTCAGCATTCCGTGGAATTTGTACCATGATCAGTGTGAATCCCA
GTGGCGTAATCCAAGATTTTATATTTTTTTGTGATGCCGTTGCATCATGGATTAACCCAAAAGATGATCT
CAGAGACATGTTCTGTAAGATCCTTCATGGATTTAAAAATCAAGTTGGCGATGAAAATTGGAGGCGTTTC
TCTGACCAGTTTCCTCTTCCCTTAAAAGAGCGTCTTGCAGCTTTTTATGGTGTTTAA

Translation (858 aa):
MEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGL
ILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE
DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM
LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFW
LTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHD
EDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV
LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL
DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPE
YIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQP
DQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQ
HVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMAITIGRLGYVCPQEVAPMLQQFIRPWCTSLR
NIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRF
SDQFPLPLKERLAAFYGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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