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Report for CCDS93941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93941.1 Public Homo sapiens 6 COL9A1 24 110 108 CCDS HistoryNCBI Gene:1297Re-query CCDS DB by CCDS ID:93941.1Re-query CCDS DB by GeneID:1297See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93941.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370496.3 ENSP00000359527.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370496.3Link to Ensembl Protein Viewer:ENSP00000359527.3Re-query CCDS DB by Nucleotide ID:ENST00000370496Re-query CCDS DB by Protein ID:ENSP00000359527
Original member Current member NCBI NM_001377291.1 NP_001364220.1 Accepted alive Link to Nucleotide Sequence:NM_001377291.1Link to Protein Sequence:NP_001364220.1Re-query CCDS DB by Nucleotide ID:NM_001377291Re-query CCDS DB by Protein ID:NP_001364220Link to BLAST:NP_001364220.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001364220.1 328 P20849-3 328 100% 0 0

Chromosomal Locations for CCDS 93941.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 70280001 70280012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70280812 70280874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70281004 70281039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70281390 70281464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70282898 70282918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70283737 70283820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70294167 70294563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70300043 70300175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70300309 70300386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70302001 70302074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70302911 70302924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGAAGACCTGCTGGAAAATTCCAGTTTTCTTCTTTGTGTGCAGTTTCCTGGAACCCTGGGCATCTGCAG
CTGTCAAGCGTCGCCCCAGATTCCCTGTCAATTCCAATTCTAATGGTGGAAATGAACTCTGTCCAAAGAT
CAGGATTGGCCAAGATGACTTACCAGGGTTTGATCTGATCTCTCAGTTCCAGGTAGATAAAGCAGCATCT
AGAAGAGCTATCCAGAGAGTAGTGGGATCAGCTACATTGCAGGTGGCTTACAAGTTGGGAAATAATGTAG
ACTTCAGGATTCCAACTAGGAATTTATATCCCAGTGGACTGCCTGAAGAATACTCCTTCTTGACGACGTT
TCGAATGACTGGAAGCACTCTCAAAAAGAACTGGAACATTTGGCAGATTCAGGATTCCTCTGGGAAGGAG
CAAGTTGGCATAAAGATTAATGGCCAAACACAATCTGTTGTATTTTCATACAAGGGACTGGATGGAAGTC
TCCAAACAGCAGCCTTTTCGAATTTGTCCTCCTTGTTTGATTCCCAGTGGCATAAGATCATGATTGGCGT
GGAGAGGAGTAGTGCTACTCTTTTTGTTGACTGCAACAGGATTGAATCTTTACCTATAAAGCCAAGAGGC
CCAATTGACATTGATGGCTTTGCTGTGCTGGGAAAACTTGCAGATAATCCTCAAGTTTCTGTTCCATTTG
AACTTCAATGGATGCTGATCCATTGTGACCCCCTGCGGCCCAGGAGAGAAACTTGCCATGAGCTGCCAGC
CAGAATAACGCCCAGCCAGACCACCGACGAGAGAGGTCCCCCGGGTGAGCAGGGTCCTCCCGGGCCTCCG
GGCCCCCCTGGAGTTCCAGGCATCGATGGCATCGACGGTGACCGAGGTCCTAAGGGCCCCCCGGGCCCCC
CGGGTCCTGCAGGTGAACCGGGAAAGCCAGGAGCTCCAGGCAAGCCTGGCACACCTGGCGCTGATACCAG
TCCTTGA

Translation (328 aa):
MKTCWKIPVFFFVCSFLEPWASAAVKRRPRFPVNSNSNGGNELCPKIRIGQDDLPGFDLISQFQVDKAAS
RRAIQRVVGSATLQVAYKLGNNVDFRIPTRNLYPSGLPEEYSFLTTFRMTGSTLKKNWNIWQIQDSSGKE
QVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQWHKIMIGVERSSATLFVDCNRIESLPIKPRG
PIDIDGFAVLGKLADNPQVSVPFELQWMLIHCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPP
GPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPGTPGADTSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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