NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS93958.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93958.1 Public Homo sapiens 6 SNX14 24 110 108 CCDS HistoryNCBI Gene:57231Re-query CCDS DB by CCDS ID:93958.1Re-query CCDS DB by GeneID:57231See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93958.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000683785.1 ENSP00000507188.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000683785.1Link to Ensembl Protein Viewer:ENSP00000507188.1Re-query CCDS DB by Nucleotide ID:ENST00000683785Re-query CCDS DB by Protein ID:ENSP00000507188
Original member Current member NCBI NM_001350537.2 NP_001337466.1 Accepted alive Link to Nucleotide Sequence:NM_001350537.2Link to Protein Sequence:NP_001337466.1Re-query CCDS DB by Nucleotide ID:NM_001350537Re-query CCDS DB by Protein ID:NP_001337466Link to BLAST:NP_001337466.1

Chromosomal Locations for CCDS 93958.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 85505967 85506005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85507233 85507289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85507968 85508059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85513800 85513895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85514070 85514234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85514506 85514629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85517756 85517875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85518008 85518048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85526126 85526237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85528262 85528362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85530192 85530275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85533599 85533800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85536792 85536924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85538838 85538864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85541985 85542043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85543182 85543306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85543605 85543760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85547112 85547226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85547317 85547397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85547506 85547550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85548301 85548376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85549723 85549879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85557976 85558060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85572137 85572215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85572298 85572371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85574258 85574378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85593579 85593718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2706 nt):
ATGGTGCCCTGGGTGCGGACGATGGGGCAGAAGCTGAAGCAGCGGCTGCGACTGGACGTGGGACGCGAGA
TCTGCCGCCAGTACCCGCTGTTCTGCTTCCTGCTGCTCTGTCTCAGCGCCGCCTCCCTGCTTCTTAACAG
GTATATTCATATTTTAATGATCTTCTGGTCATTTGTTGCTGGAGTTGTCACATTCTACTGCTCACTAGGA
CCTGATTCTCTCTTACCAAATATATTCTTCACAATAAAATACAAACCCAAGTTAGGACTTCAGGAATTAT
TTCCTCAAGGTCATAGCTGTGCTGTTTGTGGTAAAGTGAAATGTAAACGACATAGGCCTTCTTTGCTACT
TGAAAACTACCAGCCATGGCTAGACCTGAAAATTTCTTCCAAGGTTGATGCATCTCTCTCAGAGGTGGAT
ATTCCATCTATTATAACCAAGAAACTATTAAAAGCAGCAATGAAGCATATAGAAGTGATAGTTAAAGCCA
GACAGAAAGTAAAAAATACAGAGTTTTTACAGCAAGCTGCTTTAGAAGAATATGGTCCAGAGCTTCATGT
TGCTTTGAGAAGTCGAAGAGATGAATTGCACTATTTAAGGAAACTTACTGAACTGCTTTTTCCTTATATT
TTGCCTCCTAAAGCAACAGACTGCAGATCTCTGACCTTACTTATAAGAGAGATTCTGTCTGGCTCTGTGT
TCCTTCCTTCTTTGGATTTCCTAGCTGATCCAGATACTGTGAATCATTTGCTTATCATCTTCATAGATGA
CAGTCCACCTGAAAAAGCAACTGAACCGGCTTCTCCTTTGGTTCCATTCTTGCAGAAATTTGCAGAACCT
AGAAATAAAAAGCCATCTGTGCTGAAGTTAGAATTGAAGCAAATCAGAGAGCAACAAGATCTTTTATTTC
GTTTTATGAACTTTCTGAAACAAGAAGGCGCAGTGCACGTGTTGCAGTTTTGTTTGACTGTGGAGGAATT
TAATGATAGAATTTTACGACCAGAATTATCAAATGATGAAATGCTGTCTCTTCATGAAGAATTGCAGAAG
ATTTATAAAACATACTGTTTGGATGAAAGTATTGACAAAATTAGATTTGATCCCTTCATTGTAGAAGAGA
TTCAAAGAATTGCTGAAGGCCCATACATAGATGTTGTGAAACTTCAAACTATGAGATGTCTTTTTGAAGC
ATATGAACATGTTCTTTCCCTTTTGGAGAATGTATTTACTCCTATGTTCTGCCATAGTGATGAGTATTTC
AGACAACTTTTAAGAGGTGCAGAATCACCAACACGCAATTCAAAATTGAACAGAGGTAGCCTAAGTTTGG
ATGATTTTCGGAACACACAGAAAAGGGGAGAATCATTTGGAATCAGCAGAATAGGTAGCAAAATTAAAGG
AGTATTCAAAAGTACCACAATGGAGGGAGCTATGTTGCCTAATTATGGTGTAGCTGAAGGTGAAGATGAT
TTTATTGAAGAAGGTATTGTTGTAATGGAAGATGATTCTCCAGTGGAGGCTGTGAGCACACCTAATACTC
CCCGAAACCTTGCTGCATGGAAAATTAGCATTCCATATGTAGACTTTTTTGAGGATCCCTCCTCTGAAAG
GAAGGAGAAAAAAGAAAGAATTCCTGTGTTTTGTATTGATGTTGAAAGAAATGATAGAAGAGCAGTTGGA
CACGAGCCTGAACATTGGTCTGTCTATAGAAGATATCTTGAATTCTATGTACTTGAATCAAAACTAACAG
AATTTCATGGTGCATTTCCTGATGCCCAGCTTCCTTCTAAGAGGATCATTGGCCCCAAAAATTATGAATT
CTTAAAGTCAAAGAGGGAAGAGTTCCAAGAATATCTACAGAAACTTCTGCAGCATCCAGAACTGAGTAAT
AGTCAACTTCTGGCAGACTTTCTTTCCCCTAATGGTGGGGAAACACAATTTCTTGATAAGATACTACCAG
ATGTAAATCTTGGGAAAATTATAAAATCTGTTCCTGGAAAACTAATGAAAGAGAAAGGTCAGCATTTGGA
ACCTTTTATCATGAATTTCATTAATTCTTGTGAGTCTCCAAAGCCTAAACCAAGTAGACCAGAACTGACC
ATTCTCAGCCCTACTTCAGAAAACAACAAGAAGCTTTTCAATGATCTGTTTAAAAATAATGCAAACCGTG
CTGAAAATACAGAGAGAAAGCAAAATCAGAATTATTTTATGGAGGTGATGACTGTAGAAGGAGTCTATGA
TTACCTGATGTATGTAGGACGGGTAGTTTTCCAGGTTCCTGACTGGCTTCATCATCTCTTAATGGGAACT
CGAATCCTCTTTAAAAACACCCTGGAAATGTATACTGATTACTATCTTCAGTGTAAACTAGAACAGCTAT
TTCAGGAGCACCGTTTGGTCTCACTCATAACACTTCTCAGAGATGCTATATTCTGTGAAAACACTGAACC
TCGCTCTCTCCAAGATAAGCAAAAAGGAGCAAAACAGACTTTTGAAGAAATGATGAATTACATTCCAGAT
CTGTTAGTCAAGTGTATTGGTGAAGAAACCAAGTATGAAAGCATCAGACTTCTGTTTGATGGCTTACAGC
AACCAGTACTCAACAAGCAGCTGACTTATGTTTTATTGGACATTGTGATACAGGAACTGTTTCCAGAGCT
CAATAAGGTACAAAAGGAAGTTACCTCTGTGACATCTTGGATGTAA

Translation (901 aa):
MVPWVRTMGQKLKQRLRLDVGREICRQYPLFCFLLLCLSAASLLLNRYIHILMIFWSFVAGVVTFYCSLG
PDSLLPNIFFTIKYKPKLGLQELFPQGHSCAVCGKVKCKRHRPSLLLENYQPWLDLKISSKVDASLSEVD
IPSIITKKLLKAAMKHIEVIVKARQKVKNTEFLQQAALEEYGPELHVALRSRRDELHYLRKLTELLFPYI
LPPKATDCRSLTLLIREILSGSVFLPSLDFLADPDTVNHLLIIFIDDSPPEKATEPASPLVPFLQKFAEP
RNKKPSVLKLELKQIREQQDLLFRFMNFLKQEGAVHVLQFCLTVEEFNDRILRPELSNDEMLSLHEELQK
IYKTYCLDESIDKIRFDPFIVEEIQRIAEGPYIDVVKLQTMRCLFEAYEHVLSLLENVFTPMFCHSDEYF
RQLLRGAESPTRNSKLNRGSLSLDDFRNTQKRGESFGISRIGSKIKGVFKSTTMEGAMLPNYGVAEGEDD
FIEEGIVVMEDDSPVEAVSTPNTPRNLAAWKISIPYVDFFEDPSSERKEKKERIPVFCIDVERNDRRAVG
HEPEHWSVYRRYLEFYVLESKLTEFHGAFPDAQLPSKRIIGPKNYEFLKSKREEFQEYLQKLLQHPELSN
SQLLADFLSPNGGETQFLDKILPDVNLGKIIKSVPGKLMKEKGQHLEPFIMNFINSCESPKPKPSRPELT
ILSPTSENNKKLFNDLFKNNANRAENTERKQNQNYFMEVMTVEGVYDYLMYVGRVVFQVPDWLHHLLMGT
RILFKNTLEMYTDYYLQCKLEQLFQEHRLVSLITLLRDAIFCENTEPRSLQDKQKGAKQTFEEMMNYIPD
LLVKCIGEETKYESIRLLFDGLQQPVLNKQLTYVLLDIVIQELFPELNKVQKEVTSVTSWM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH