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Report for CCDS9678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9678.1 Public Homo sapiens 14 LRFN5 24 110 108 CCDS HistoryNCBI Gene:145581Re-query CCDS DB by CCDS ID:9678.1Re-query CCDS DB by GeneID:145581See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9678.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298119.9 ENSP00000298119.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000298119.9Link to Ensembl Protein Viewer:ENSP00000298119.4Re-query CCDS DB by Nucleotide ID:ENST00000298119Re-query CCDS DB by Protein ID:ENSP00000298119
Original member Current member NCBI NM_001346173.2 NP_001333102.1 Accepted alive Link to Nucleotide Sequence:NM_001346173.2Link to Protein Sequence:NP_001333102.1Re-query CCDS DB by Nucleotide ID:NM_001346173Re-query CCDS DB by Protein ID:NP_001333102Link to BLAST:NP_001333102.1
Original member Current member NCBI NM_152447.5 NP_689660.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152447.5Link to Protein Sequence:NP_689660.2Re-query CCDS DB by Nucleotide ID:NM_152447Re-query CCDS DB by Protein ID:NP_689660Link to BLAST:NP_689660.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001333102.1 719 Q96NI6 719 100% 0 0
NP_689660.2 719 Q96NI6 719 100% 0 0

Chromosomal Locations for CCDS 9678.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 41886626 41888010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41891250 41891962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41898917 41898960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41904158 41904175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2160 nt):
ATGGAAAAAATTCTTTTTTATCTGTTTCTCATTGGCATAGCAGTGAAAGCTCAGATCTGTCCAAAGCGTT
GTGTCTGTCAGATTTTGTCTCCTAATCTTGCAACCCTTTGTGCCAAGAAAGGGCTTTTATTTGTTCCACC
AAACATTGACAGAAGAACTGTGGAACTGCGGTTGGCAGACAATTTTGTTACAAATATTAAAAGGAAAGAT
TTTGCCAATATGACCAGCTTGGTGGACCTGACTCTATCCAGGAATACAATAAGTTTTATTACACCTCATG
CTTTCGCTGACCTACGAAATTTGAGGGCTTTGCATTTGAATAGCAACAGATTGACTAAAATTACAAATGA
TATGTTCAGTGGTCTTTCCAATCTTCATCATTTGATACTGAACAACAATCAGCTGACTTTAATTTCCTCT
ACAGCGTTTGATGATGTCTTCGCCCTTGAGGAGCTGGATCTGTCCTATAATAATCTAGAAACCATTCCTT
GGGATGCTGTTGAGAAGATGGTTAGCTTGCATACCCTTAGTTTGGATCACAATATGATTGATAACATTCC
TAAGGGGACCTTCTCCCATTTGCACAAGATGACTCGGTTAGATGTGACATCAAATAAATTGCAGAAGCTA
CCACCTGACCCTCTCTTTCAGCGAGCTCAGGTACTAGCAACCTCAGGAATCATAAGCCCATCTACTTTTG
CATTAAGTTTTGGTGGAAACCCCTTGCATTGCAATTGTGAATTGTTGTGGTTGAGGCGTCTGTCCAGAGA
AGATGACTTAGAGACCTGTGCTTCTCCTCCACTTTTAACTGGCCGCTACTTTTGGTCAATTCCTGAAGAA
GAGTTTTTGTGTGAGCCTCCTCTCATTACTCGTCATACACATGAGATGAGAGTCCTGGAGGGACAAAGGG
CAACACTGAGGTGCAAAGCCAGGGGAGACCCTGAGCCTGCAATTCACTGGATTTCTCCTGAAGGGAAGCT
TATTTCAAATGCAACAAGATCTCTGGTGTATGATAACGGAACACTTGACATTCTTATCACAACTGTAAAG
GATACAGGTGCTTTTACCTGCATTGCTTCCAATCCTGCTGGGGAAGCAACACAAATAGTGGATCTTCATA
TAATTAAGCTCCCTCACTTACTAAATAGTACAAACCATATCCATGAGCCTGATCCTGGTTCTTCAGATAT
CTCAACTTCTACCAAGTCAGGTTCTAATACAAGCAGTAGTAATGGTGATACTAAATTGAGTCAAGATAAA
ATTGTGGTGGCAGAAGCTACATCATCAACGGCACTACTTAAATTTAATTTTCAAAGAAATATCCCTGGAA
TACGTATGTTTCAAATCCAGTACAATGGTACTTATGATGACACCCTTGTTTACAGAATGATACCTCCTAC
GAGCAAAACTTTTCTGGTCAATAATCTGGCTGCTGGAACTATGTATGACTTGTGTGTCTTGGCCATATAT
GATGATGGCATCACTTCCCTCACTGCCACAAGAGTCGTGGGTTGCATCCAGTTTACTACGGAACAGGATT
ATGTGCGTTGCCATTTCATGCAGTCTCAGTTTTTGGGAGGCACCATGATTATTATTATTGGTGGAATCAT
TGTAGCATCTGTGCTGGTATTCATCATTATTCTGATGATCCGGTATAAGGTTTGCAACAATAATGGGCAA
CACAAGGTCACCAAGGTTAGCAATGTTTATTCCCAAACTAACGGGGCTCAAATACAAGGCTGTAGTGTAA
CGCTGCCCCAGTCCGTGTCCAAACAAGCTGTGGGACACGAAGAGAATGCCCAGTGTTGTAAAGCTACCAG
TGACAATGTGATTCAATCTTCAGAAACTTGTTCGAGTCAGGACTCCTCTACCACTACCTCTGCTTTGCCT
CCTTCCTGGACTTCAAGCACTTCTGTGTCCCAAAAGCAGAAAAGAAAGACTGGCACAAAGCCAAGTACAG
AACCACAGAATGAAGCCGTCACAAATGTTGAATCCCAAAACACTAACAGGAACAACTCAACTGCCTTGCA
GTTAGCTAGCCGTCCTCCCGATTCTGTCACAGAGGGGCCCACGTCTAAAAGAGCACATATAAAGCCAAAT
GCTTTGCTGACTAATGTTGACCAGATTGTCCAGGAAACACAGAGGCTGGAGTTAATCTGA

Translation (719 aa):
MEKILFYLFLIGIAVKAQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRRTVELRLADNFVTNIKRKD
FANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGLSNLHHLILNNNQLTLISS
TAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKL
PPDPLFQRAQVLATSGIISPSTFALSFGGNPLHCNCELLWLRRLSREDDLETCASPPLLTGRYFWSIPEE
EFLCEPPLITRHTHEMRVLEGQRATLRCKARGDPEPAIHWISPEGKLISNATRSLVYDNGTLDILITTVK
DTGAFTCIASNPAGEATQIVDLHIIKLPHLLNSTNHIHEPDPGSSDISTSTKSGSNTSSSNGDTKLSQDK
IVVAEATSSTALLKFNFQRNIPGIRMFQIQYNGTYDDTLVYRMIPPTSKTFLVNNLAAGTMYDLCVLAIY
DDGITSLTATRVVGCIQFTTEQDYVRCHFMQSQFLGGTMIIIIGGIIVASVLVFIIILMIRYKVCNNNGQ
HKVTKVSNVYSQTNGAQIQGCSVTLPQSVSKQAVGHEENAQCCKATSDNVIQSSETCSSQDSSTTTSALP
PSWTSSTSVSQKQKRKTGTKPSTEPQNEAVTNVESQNTNRNNSTALQLASRPPDSVTEGPTSKRAHIKPN
ALLTNVDQIVQETQRLELI


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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