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Report for CCDS47585.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47585.1 Public Homo sapiens 7 SPMIP7 24 110 108 CCDS HistoryNCBI Gene:100130988Re-query CCDS DB by CCDS ID:47585.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47585.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297001.7 ENSP00000297001.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297001.7Link to Ensembl Protein Viewer:ENSP00000297001.7Re-query CCDS DB by Nucleotide ID:ENST00000297001Re-query CCDS DB by Protein ID:ENSP00000297001
Original member Current member NCBI NM_001161834.3 NP_001155306.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001161834.3Link to Protein Sequence:NP_001155306.3Re-query CCDS DB by Nucleotide ID:NM_001161834Re-query CCDS DB by Protein ID:NP_001155306Link to BLAST:NP_001155306.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155306.3 438 A4D263 438 100% 0 0

Chromosomal Locations for CCDS 47585.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 50096086 50096638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50104314 50104411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50129717 50129793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50134108 50134246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50136098 50136165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50140140 50140181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50141281 50141388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50151450 50151557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50159046 50159169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGGATGTAGAAATTCAGGACACACCTGGAAAGATAAGTATCTCTAAAAGGTCCATCCTTTCAGGAACTG
TTGAGAATATAGATTACCCACACTATTGTGATCTCTTAAGAAAAATGAACATGCCTTTTGTGAAAGGTCT
TGAGAACAGACATAACTATGGCAGGTTTGAAAAGAAATGCAACCCTGCTTTTCTTAAATTTCACCCTTAT
CCCCCTTCAGTTTTGCCAGACTATCATTTACATGATCCTTATCCCCCACCATATGGGCCACATTATCCAT
TATTTCCACTTCGGGATGATGTGACCTTAGGTGATTCCTGTTCAGGGTTTATGAGTCCTGGTGGTGATGC
TGATTTAAATCCTGGCATTGGCAGAACCATACCAACCCTAGTGGATTTTAGTGATGTGAAACCTCAACAT
CGAGTTCCCAGACCAGACACAGGATTTCAAACAACAATAAAAAGGCAAAAAATTCTATCAGAAGAACTGC
AACAGAACAGGAGATGGAATTCCAGGGAAGTACCAGACATTTCTATCAGAGCAAGACTTGGAGGTTGGAC
AAGCCCTCTGAAAGTTACTCCCTTACAACCTCATCATGAAGGACGCTCATTAAGTCACATATTTACATTT
GATGAGGAGGCAACATGTACAGATGAAGGTGAACCACTTGTTCAAACAAACAAGAAATGTAATGCAAAGG
ACTCATTTTACAAGTCCTCTACACAAAAAGCTTATGAAGATGTTCCTTGGGATAAGATGCTACCACCAAA
ACTTGTTCCAGAAGAAACAACATTGGAAAAAACCGCTGACCCCATCTCACAGTGTTTTACTCTGAAAAGA
TATAAAGGGGTGCCAGCAATAACTCAGATGGTTGGTGAGCTCTGGGACAGATTTCAAACAAGATCTTTCT
TGGCACCAGTCAAACCAATTAATTTTGTGAGTTCAAGTTCTAGAAGTAAATATATTCCTCTCTATACTGG
TCATGTGCAGTCTACAAATGCTGATGATGTTGACAACCCCTTGGGAGACATCGCATCGCTAGCCAAGCAG
CGGTACTCTAAGCCTCTTTATACAAACACAAGTCGTGCTGCAAATATTCCAGGATATACCGGCAAGGTTC
ATTTCACAGCCACCCACCCAGCAAATTCTAATATTCCATCAACAACCCCATCACCAGATTCAGAACTGCA
CCGCGTCTTCCAGAAAGAAATGGCAGTTGACCTCTTCCGTCACCAGGCTCCCCTGTCTCGACTGGTCACA
ACTGTGAGACCCTACAACCCTTTCAACAAGAAGGACAAAGAAACCATAGACTACTAG

Translation (438 aa):
MDVEIQDTPGKISISKRSILSGTVENIDYPHYCDLLRKMNMPFVKGLENRHNYGRFEKKCNPAFLKFHPY
PPSVLPDYHLHDPYPPPYGPHYPLFPLRDDVTLGDSCSGFMSPGGDADLNPGIGRTIPTLVDFSDVKPQH
RVPRPDTGFQTTIKRQKILSEELQQNRRWNSREVPDISIRARLGGWTSPLKVTPLQPHHEGRSLSHIFTF
DEEATCTDEGEPLVQTNKKCNAKDSFYKSSTQKAYEDVPWDKMLPPKLVPEETTLEKTADPISQCFTLKR
YKGVPAITQMVGELWDRFQTRSFLAPVKPINFVSSSSRSKYIPLYTGHVQSTNADDVDNPLGDIASLAKQ
RYSKPLYTNTSRAANIPGYTGKVHFTATHPANSNIPSTTPSPDSELHRVFQKEMAVDLFRHQAPLSRLVT
TVRPYNPFNKKDKETIDY


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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