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Report for CCDS94088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94088.1 Public Homo sapiens 7 POU6F2 24 110 108 CCDS HistoryNCBI Gene:11281Re-query CCDS DB by CCDS ID:94088.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 94088.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000518318.7 ENSP00000430514.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000518318.7Link to Ensembl Protein Viewer:ENSP00000430514.3Re-query CCDS DB by Nucleotide ID:ENST00000518318Re-query CCDS DB by Protein ID:ENSP00000430514
Original member Current member NCBI NM_001370959.1 NP_001357888.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370959.1Link to Protein Sequence:NP_001357888.1Re-query CCDS DB by Nucleotide ID:NM_001370959Re-query CCDS DB by Protein ID:NP_001357888Link to BLAST:NP_001357888.1

Chromosomal Locations for CCDS 94088.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 38977954 38978058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 39085860 39086031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 39204235 39204326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 39207392 39207620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 39339642 39340015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 39406600 39406740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 39433077 39433283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 39451533 39451701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 39460547 39460715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 39464182 39464686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2163 nt):
ATGCATGCCAGAAACCCCCATTCTCCTTTTCAAAGACAACATATGATGGATTGCTATCTCTCAGCGCAGC
AGGACACGGGGACCATGCAAGCTGTAATTGGTCAGGATCCAATGATAGCTGGACAAGTCAGTAAGCCCTT
GCTGTCAGTGCGGAGTGAAATGAATGCGGAGTTGAGAGGTGAGGACAAGGCTGCTACTTCAGACAGCGAG
CTGAATGAGCCCCTGCTTGCGCCTGTGGAATCAAATGACAGCGAGGACACTCCCAGCAAGCTCTTCGGGG
CTAGAGGAAACCCAGCATTATCAGACCCAGGCACTCCTGACCAACACCAGGCCAGTCAGACCCACCCCCC
ATTTCCAGTTGGGCCACAGCCACTTCTGACGGCACAGCAGTTAGCTTCTGCTGTGGCCGGCGTGATGCCG
GGAGGCCCCCCAGCCCTCAACCAGCCAATCCTCATTCCCTTCAACATGGCGGGACAGCTAGGAGGCCAGC
AAGGACTGGTTCTCACACTGCCAACAGCGAATCTCACCAACATCCAAGGGCTGGTGGCAGCAGCTGCAGC
CGGAGGCATTATGACTCTGCCACTGCAAAATCTACAAGCTACCTCATCCCTGAACTCCCAGCTCCAGCAG
CTCCAGCTCCAGCTCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCTCCCCCGTCAACCAACCAGCACC
CGCAACCAGCCCCACAGGCGCCCTCGCAGTCCCAGCAGCAGCCGCTGCAGCCCACCCCACCCCAGCAGCC
ACCACCCGCCTCTCAGCAGCCGCCAGCTCCTACATCTCAGCTGCAACAGGCGCCTCAGCCCCAGCAGCAC
CAACCCCACTCCCACTCCCAGAACCAGAACCAACCATCTCCAACCCAGCAGAGCTCCAGCCCCCCGCAGA
AACCTAGTCAGTCTCCAGGACATGGCCTGCCTTCACCGCTCACGCCACCCAATCCTCTACAGCTGGTTAA
TAATCCACTAGCAAGTCAGGCTGCAGCGGCTGCAGCAGCCATGAGCTCCATAGCAAGCTCACAGGCCTTT
GGCAATGCCCTCTCCAGTCTTCAGGGGGTCACAGGTCAACTAGTTACTAATGCACAAGGACAGATTATCG
GGACCATTCCACTGATGCCTAATCCAGGGCCATCGAGCCAAGCAGCAAGCGGCACTCAGGGCTTGCAAGT
GCAGCCAATCACCCCCCAGCTCCTCACAAACGCCCAGGGCCAGATCATCGCCACAGTCATTGGGAACCAG
ATCCTGCCCGTGATCAACACCCAGGGCATCACGCTGTCACCCATCAAGCCCGGCCAGCAGCTCCACCAAC
CCTCCCAGACGTCAGTGGGTCAAGCAGCCTCCCAAGGCAACCTTCTGCACCTGGCTCACAGCCAAGCATC
CATGTCTCAAAGTCCCGTCCGGCAGGCTTCCTCTTCTTCCTCCTCATCCTCCTCTTCTTCAGCTTTGAGC
GTGGGCCAGTTAGTCAGCAATCCTCAAACGGCAGCGGGTGAGGTGGATGGGGTTAATCTGGAGGAGATCC
GAGAATTTGCCAAAGCTTTTAAAATCCGGCGCCTGTCCCTTGGCCTGACCCAGACTCAGGTGGGACAGGC
TCTCAGTGCTACAGAGGGCCCCGCGTACAGCCAGTCGGCCATCTGCAGACACACCATCCTGAGAAGCCAC
TTTTTCCTACCACAGGAAGCCCAAGAGAACACTATAGCTAGCAGTCTGACAGCCAAACTGAACCCTGGCC
TTTTGTATCCTGCCAGGTTTGAAAAGCTGGACATCACCCCTAAAAGTGCCCAGAAGATCAAGCCGGTGCT
TGAGCGGTGGATGGCTGAGGCTGAGGCCCGCCATCGAGCAGGTATGCAGAACCTGACCGAGTTTATCGGG
AGTGAACCATCCAAAAAGCGCAAGCGGCGCACCTCCTTCACACCCCAGGCCCTTGAGATCCTCAATGCCC
ACTTTGAGAAGAACACACACCCTTCTGGGCAGGAAATGACCGAAATTGCTGAGAAGCTGAACTATGACCG
AGAAGTAGTTAGAGTTTGGTTCTGCAATAAGAGGCAAGCCCTGAAGAACACAATTAAACGCTTAAAACAG
CACGAGCCGGCCACGGCAGTCCCTTTGGAGCCCTTAACAGACTCTCTGGAAGAAAACTCCTAA

Translation (720 aa):
MHARNPHSPFQRQHMMDCYLSAQQDTGTMQAVIGQDPMIAGQVSKPLLSVRSEMNAELRGEDKAATSDSE
LNEPLLAPVESNDSEDTPSKLFGARGNPALSDPGTPDQHQASQTHPPFPVGPQPLLTAQQLASAVAGVMP
GGPPALNQPILIPFNMAGQLGGQQGLVLTLPTANLTNIQGLVAAAAAGGIMTLPLQNLQATSSLNSQLQQ
LQLQLQQQQQQQQQQPPPSTNQHPQPAPQAPSQSQQQPLQPTPPQQPPPASQQPPAPTSQLQQAPQPQQH
QPHSHSQNQNQPSPTQQSSSPPQKPSQSPGHGLPSPLTPPNPLQLVNNPLASQAAAAAAAMSSIASSQAF
GNALSSLQGVTGQLVTNAQGQIIGTIPLMPNPGPSSQAASGTQGLQVQPITPQLLTNAQGQIIATVIGNQ
ILPVINTQGITLSPIKPGQQLHQPSQTSVGQAASQGNLLHLAHSQASMSQSPVRQASSSSSSSSSSSALS
VGQLVSNPQTAAGEVDGVNLEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRHTILRSH
FFLPQEAQENTIASSLTAKLNPGLLYPARFEKLDITPKSAQKIKPVLERWMAEAEARHRAGMQNLTEFIG
SEPSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQALKNTIKRLKQ
HEPATAVPLEPLTDSLEENS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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