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Report for CCDS34047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34047.1 Public Homo sapiens 4 CYP2U1 24 110 108 CCDS HistoryNCBI Gene:113612Re-query CCDS DB by CCDS ID:34047.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34047.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332884.11 ENSP00000333212.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332884.11Link to Ensembl Protein Viewer:ENSP00000333212.6Re-query CCDS DB by Nucleotide ID:ENST00000332884Re-query CCDS DB by Protein ID:ENSP00000333212
Original member Current member NCBI NM_183075.3 NP_898898.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_183075.3Link to Protein Sequence:NP_898898.1Re-query CCDS DB by Nucleotide ID:NM_183075Re-query CCDS DB by Protein ID:NP_898898Link to BLAST:NP_898898.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898898.1 544 Q7Z449-1 544 100% 0 0

Chromosomal Locations for CCDS 34047.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 107931644 107932133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107944970 107945605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107947376 107947537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107949350 107949517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107950245 107950423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGTCGTCTCCGGGGCCGTCGCAGCCGCCGGCCGAGGACCCGCCCTGGCCCGCGCGCCTCCTGCGTGCGC
CT
CTGGGGCTGCTGCGGCTGGACCCCAGCGGGGGCGCGCTGCTGCTATGCGGCCTCGTAGCGCTGCTGGG
C
TGGAGCTGGCTGCGGAGGCGCCGGGCGCGGGGCATCCCGCCCGGGCCCACGCCCTGGCCTCTGGTGGGC
AAC
TTCGGTCACGTGCTGCTGCCTCCCTTCCTCCGGCGGCGGAGCTGGCTGAGCAGCAGGACCAGGGCCG
CA
GGGATTGATCCCTCGGTCATAGGCCCGCAGGTGCTCCTGGCTCACCTAGCCCGCGTGTACGGCAGCAT
C
TTCAGCTTCTTTATCGGCCACTACCTGGTGGTGGTCCTCAGCGACTTCCACAGCGTGCGCGAGGCGCTG
GTG
CAGCAGGCCGAGGTCTTCAGCGACCGCCCGCGGGTGCCGCTCATCTCCATCGTGACCAAGGAGAAGG
GG
GTTGTGTTTGCACATTATGGTCCCGTCTGGAGACAACAAAGGAAGTTCTCTCATTCAACTCTTCGTCA
T
TTTGGGTTGGGAAAACTTAGCTTGGAGCCCAAGATTATTGAGGAGTTCAAATATGTGAAAGCAGAAATG
CAA
AAGCACGGAGAAGACCCCTTCTGCCCTTTCTCCATCATCAGCAATGCCGTCTCTAACATCATTTGCT
CC
TTGTGCTTTGGCCAGCGCTTTGATTACACTAATAGTGAGTTCAAGAAAATGCTTGGTTTTATGTCACG
A
GGCCTAGAAATCTGTCTGAACAGTCAAGTCCTCCTGGTCAACATATGCCCTTGGCTTTATTACCTTCCC
TTT
GGACCATTTAAGGAATTAAGACAAATTGAAAAGGATATAACCAGTTTCCTTAAAAAAATCATCAAAG
AC
CATCAAGAGTCTCTGGATAGAGAGAACCCTCAGGACTTCATAGACATGTACCTTCTCCACATGGAAGA
G
GAGAGGAAAAATAATAGTAACAGCAGTTTTGATGAAGAGTACTTATTTTATATCATTGGGGATCTCTTT
ATT
GCTGGGACTGATACCACAACTAACTCTTTGCTCTGGTGCCTGCTGTATATGTCGCTGAACCCCGATG
TA
CAAGAAAAGGTTCATGAAGAAATTGAAAGAGTCATTGGCGCCAACCGAGCTCCTTCCCTCACAGACAA
G
GCCCAGATGCCCTACACAGAAGCCACCATCATGGAAGTGCAGAGGCTAACTGTGGTGGTGCCGCTTGCC
ATT
CCTCATATGACCTCAGAGAACACAGTGCTCCAAGGGTATACCATTCCTAAAGGCACATTGATCTTAC
CC
AACCTGTGGTCAGTACATAGAGACCCAGCCATTTGGGAGAAACCGGAGGATTTCTACCCTAATCGATT
T
CTGGATGACCAAGGACAACTAATTAAAAAAGAAACCTTTATTCCTTTTGGGATAGGGAAGCGGGTGTGT
ATG
GGAGAACAACTGGCAAAGATGGAATTATTCCTAATGTTTGTGAGCCTAATGCAGAGTTTCGCATTTG
CT
TTACCTGAGGATTCTAAGAAGCCCCTCCTGACTGGAAGATTTGGTCTAACTTTAGCCCCACATCCATT
T
AATATAACTATTTCAAGGAGATGA


Translation (544 aa):
MSSPGPSQPPAEDPPWPARLLRAPLGLLRLDPSGGALLLCGLVALLGWSWLRRRRARGIPPGPTPWPLVG
N
FGHVLLPPFLRRRSWLSSRTRAAGIDPSVIGPQVLLAHLARVYGSIFSFFIGHYLVVVLSDFHSVREAL
V
QQAEVFSDRPRVPLISIVTKEK
GVVFAHYGPVWRQQRKFSHSTLRHFGLGKLSLEPKIIEEFKYVKAEM
Q
KHGEDPFCPFSIISNAVSNIICSLCFGQRFDYTNSEFKKMLGFMSRGLEICLNSQVLLVNICPWLYYLP
F
GPFKELRQIEKDITSFLKKIIKDHQESLDRENPQDFIDMYLLHMEEERKNNSNSSFDEEYLFYIIGDLF
I
AGTDTTTNSLLWCLLYMSLNPDVQ
EKVHEEIERVIGANRAPSLTDKAQMPYTEATIMEVQRLTVVVPLA
I
PHMTSENT
VLQGYTIPKGTLILPNLWSVHRDPAIWEKPEDFYPNRFLDDQGQLIKKETFIPFGIGKRVC
M
GEQLAKMELFLMFVSLMQSFAFALPEDSKKPLLTGRFGLTLAPHPFNITISRR




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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