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Report for CCDS34654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34654.1 Public Homo sapiens 7 TRIM50 24 110 108 CCDS HistoryNCBI Gene:135892Re-query CCDS DB by CCDS ID:34654.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34654.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333149.7 ENSP00000327994.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333149.7Link to Ensembl Protein Viewer:ENSP00000327994.2Re-query CCDS DB by Nucleotide ID:ENST00000333149Re-query CCDS DB by Protein ID:ENSP00000327994
Original member Current member EBI ENST00000453152.1 ENSP00000413875.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000453152.1Link to Ensembl Protein Viewer:ENSP00000413875.1Re-query CCDS DB by Nucleotide ID:ENST00000453152Re-query CCDS DB by Protein ID:ENSP00000413875
Original member Current member NCBI NM_001281451.1 NP_001268380.1 Accepted alive Link to Nucleotide Sequence:NM_001281451.1Link to Protein Sequence:NP_001268380.1Re-query CCDS DB by Nucleotide ID:NM_001281451Re-query CCDS DB by Protein ID:NP_001268380Link to BLAST:NP_001268380.1
Original member Current member NCBI NM_178125.3 NP_835226.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178125.3Link to Protein Sequence:NP_835226.2Re-query CCDS DB by Nucleotide ID:NM_178125Re-query CCDS DB by Protein ID:NP_835226Link to BLAST:NP_835226.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268380.1 487 Q86XT4-1 487 100% 0 0
NP_835226.2 487 Q86XT4-1 487 100% 0 0

Chromosomal Locations for CCDS 34654.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 73312921 73313510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73316565 73316689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73318687 73318709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73318822 73319052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73320147 73320242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73324389 73324787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGGCTTGGCAGGTGAGCCTGCCAGAGCTGGAGGACCGGCTTCAGTGTCCCATCTGCCTGGAGGTCTTCA
AGGAGCCCCTGATGCTGCAGTGTGGCCACTCTTACTGCAAGGGCTGCCTGGTTTCCCTGTCCTGCCACCT
GGATGCCGAGCTGCGCTGCCCCGTGTGCCGGCAGGCGGTGGACGGCAGCAGCTCCCTGCCCAACGTCTCC
CTGGCCAGGGTGATCGAAGCCCTGAGGCTCCCTGGGGACCCGGAGCCCAAGGTCTGCGTGCACCACCGGA
ACCCGCTCAGCCTTTTCTGCGAGAAGGACCAGGAGCTCATCTGTGGCCTCTGCGGTCTGCTGGGCTCCCA
CCAACACCACCCGGTCACGCCCGTCTCCACCGTCTACAGCCGCATGAAGGAGGAGCTCGCAGCCCTCATC
TCTGAGCTGAAGCAGGAGCAGAAAAAGGTGGATGAGCTCATCGCCAAACTGGTGAACAACCGGACCCGAA
TCGTCAATGAGTCGGATGTCTTCAGCTGGGTGATCCGCCGCGAGTTCCAGGAGCTGCACCACCTGGTGGA
TGAGGAGAAGGCCCGCTGCCTGGAGGGGATAGGGGGTCACACCCGTGGCCTGGTGGCCTCCCTGGACATG
CAGCTGGAGCAGGCCCAGGGAACCCGGGAGCGGCTGGCCCAAGCCGAGTGTGTGCTGGAACAGTTCGGCA
ATGAGGACCACCACAAGTTCATCCGGAAGTTCCACTCCATGGCCTCCAGAGCAGAGATGCCGCAGGCCCG
GCCCTTAGAAGGCGCATTCAGCCCCATCTCCTTCAAGCCAGGCCTCCACCAGGCTGACATCAAGCTGACC
GTGTGGAAAAGGCTCTTCCGGAAAGTTTTGCCAGCCCCGGAGCCTCTCAAGTTGGACCCTGCCACTGCCC
ACCCACTCCTGGAGCTCTCCAAGGGCAACACGGTGGTGCAGTGCGGGCTTCTGGCCCAGCGGCGAGCCAG
CCAGCCTGAGCGCTTCGACTACAGCACCTGCGTCCTGGCCAGCCGCGGCTTCTCCTGCGGCCGCCACTAC
TGGGAGGTGGTGGTGGGCAGCAAGAGCGACTGGCGCCTGGGGGTCATCAAGGGCACAGCCAGCCGTAAGG
GCAAGCTGAACAGGTCCCCCGAGCACGGCGTGTGGCTGATCGGCCTGAAGGAGGGCCGGGTGTACGAAGC
CTTTGCCTGCCCCCGGGTACCCCTGCCCGTGGCCGGCCACCCCCACCGCATCGGGCTCTACCTGCACTAT
GAGCAGGGCGAACTCACCTTCTTCGATGCCGACCGCCCCGATGACCTGCGGCCGCTCTACACCTTCCAGG
CCGACTTCCAGGGCAAGCTCTACCCCATCCTGGACACCTGCTGGCACGAGAGGGGCAGCAACTCGCTGCC
CATGGTGCTGCCCCCGCCCAGCGGGCCTGGCCCCCTCAGCCCCGAGCAGCCCACCAAGCTGTAG

Translation (487 aa):
MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAVDGSSSLPNVS
LARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHHPVTPVSTVYSRMKEELAALI
SELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQELHHLVDEEKARCLEGIGGHTRGLVASLDM
QLEQAQGTRERLAQAECVLEQFGNEDHHKFIRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLT
VWKRLFRKVLPAPEPLKLDPATAHPLLELSKGNTVVQCGLLAQRRASQPERFDYSTCVLASRGFSCGRHY
WEVVVGSKSDWRLGVIKGTASRKGKLNRSPEHGVWLIGLKEGRVYEAFACPRVPLPVAGHPHRIGLYLHY
EQGELTFFDADRPDDLRPLYTFQADFQGKLYPILDTCWHERGSNSLPMVLPPPSGPGPLSPEQPTKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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