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Report for CCDS35362.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35362.2 Public Homo sapiens X H2BW1 24 110 108 CCDS HistoryNCBI Gene:158983Re-query CCDS DB by CCDS ID:35362.2See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 35362.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217926.7 ENSP00000354723.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217926.7Link to Ensembl Protein Viewer:ENSP00000354723.5Re-query CCDS DB by Nucleotide ID:ENST00000217926Re-query CCDS DB by Protein ID:ENSP00000354723
Original member Current member NCBI NM_001002916.5 NP_001002916.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001002916.5Link to Protein Sequence:NP_001002916.4Re-query CCDS DB by Nucleotide ID:NM_001002916Re-query CCDS DB by Protein ID:NP_001002916Link to BLAST:NP_001002916.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002916.4 147 Q7Z2G1-3 147 100% 0 0

Chromosomal Locations for CCDS 35362.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 104012712 104012748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 104013170 104013576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGGCTGGACCTTCCTCTGAGACGACCTCTGAGGAACAGCTGATCACCCAGGAGCCCAAAGAGGCCAACT
CCACTACGTCCCAGAAGCAGAGCAAGCAGAGGAAGCGAGGGCGCCATGGGCCCCGCAGGTGCCACTCCAA
CTGCCGCGGGGACAGCTTCGCCACCTATTTCCGCCGGGTGCTGAAGCAGGTTCACCAGGGCCTCAGCCTT
TCCCGGGAGGCCGTGAGTGTCATGGATTCTTTGGTTCATGACATATTGGACCGCATCGCCACCGAGGCTG
GTCACCTGGCCCGCTCCACCAAGCGCCAGACCATCACTGCCTGGGAGACCCGGATGGCTGTGCGCCTGCT
GCTGCCGGGGCAGATGGGCAAGCTCGCCGAGTCCGAAGGCACGAAGGCTGTCCTCAGAACTTCACTGTAT
GCCATACAGCAACAGAGAAAGTGA

Translation (147 aa):
MAGPSSETTSEEQLITQEPKEANSTTSQKQSKQRKRGRHGPRRCHSNCRGDSFATYFRRVLKQVHQGLSL
SREAVSVMDSLVHDILDRIATEAGHLARSTKRQTITAWETRMAVRLLLPGQMGKLAESEGTKAVLRTSLY
AIQQQRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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