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Report for CCDS34390.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34390.1 Public Homo sapiens 6 PSORS1C1 24 110 108 CCDS HistoryNCBI Gene:170679Re-query CCDS DB by CCDS ID:34390.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34390.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259881.10 ENSP00000259881.9 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000259881.10Link to Ensembl Protein Viewer:ENSP00000259881.9Re-query CCDS DB by Nucleotide ID:ENST00000259881Re-query CCDS DB by Protein ID:ENSP00000259881
Original member Current member NCBI NM_014068.3 NP_054787.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014068.3Link to Protein Sequence:NP_054787.2Re-query CCDS DB by Nucleotide ID:NM_014068Re-query CCDS DB by Protein ID:NP_054787Link to BLAST:NP_054787.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054787.2 152 Q9UIG5-1 152 100% 0 0

Chromosomal Locations for CCDS 34390.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31129633 31129645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31138430 31138459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31138656 31138779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31139641 31139932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGACTTGCACAGACCAAAAAAGTCACTCTCAAAGAGCTCTCGGCACACAGACCCCAGCTTTACAAGGAC
CCCAGCTCCTTAACACAGATCCCAGCTCCGAGGAAACTCGTCCCCCCCACGTTAATCCTGACCGACTTTG
CCACATGGAGCCAGCAAACCATTTCTGGCATGCAGGGGACCTCCAAGCAATGATATCCAAGGAATTCCAT
CTGGCAGCCACCCAGGATGACTGCAGAAAAGGAAGGACACAGGAGGATATCCTGGTTCCCTCTTCCCACC
CAGAGCTGTTTGCATCAGTCCTGCCAATGGCTCCGGAAGAAGCTGCCAGGCTCCAGCAACCTCAGCCCCT
TCCTCCTCCCTCAGGAATCCACCTATCCGCCTCTAGGACCTTGGCTCCAACTCTATTGTACTCGTCTCCT
CCCTCCCATTCTCCTTTTGGTCTCAGCTCCTTGATCTAA

Translation (152 aa):
MTCTDQKSHSQRALGTQTPALQGPQLLNTDPSSEETRPPHVNPDRLCHMEPANHFWHAGDLQAMISKEFH
LAATQDDCRKGRTQEDILVPSSHPELFASVLPMAPEEAARLQQPQPLPPPSGIHLSASRTLAPTLLYSSP
PSHSPFGLSSLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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