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Report for CCDS4486.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4486.1 Public Homo sapiens 6 PXDC1 24 110 108 CCDS HistoryNCBI Gene:221749Re-query CCDS DB by CCDS ID:4486.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4486.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380283.5 ENSP00000369636.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380283.5Link to Ensembl Protein Viewer:ENSP00000369636.5Re-query CCDS DB by Nucleotide ID:ENST00000380283Re-query CCDS DB by Protein ID:ENSP00000369636
Original member Current member NCBI NM_183373.4 NP_899229.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_183373.4Link to Protein Sequence:NP_899229.2Re-query CCDS DB by Nucleotide ID:NM_183373Re-query CCDS DB by Protein ID:NP_899229Link to BLAST:NP_899229.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899229.2 231 Q5TGL8 231 100% 0 0

Chromosomal Locations for CCDS 4486.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 3723619 3723736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3727551 3727662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3737079 3737196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3738057 3738148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3751276 3751531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGGCCTCGGCGGTGTTTGAGGGCACGTCGCTCGTGAACATGTTCGTGCGCGGCTGCTGGGTGAACGGCA
TCCGCAGGCTCATCGTCAGCCGGCGCGGCGACGAAGAGGAGTTCTTCGAGATCCGCACGGAGTGGTCGGA
CCGCAGCGTGCTCTACCTGCACCGCAGCCTGGCGGACCTGGGCCGCCTGTGGCAGCGCCTGCGCGACGCC
TTTCCCGAGGACCGGTCCGAACTGGCGCAGGGGCCGCTGCGGCAAGGACTGGTTGCCATAAAGGAAGCCC
ACGACATAGAGACCAGGCTTAATGAGGTGGAGAAGCTGCTGAAGACGATCATAAGCATGCCCTGTAAATA
TTCTAGATCGGAAGTTGTGCTCACCTTCTTCGAAAGATCTCCTCTGGATCAGGTGTTAAAAAATGATAAT
GTGCATAAAATTCAACCCAGCTTTCAAAGTCCAGTCAAAATATCAGAAATCATGAGGTCCAATGGATTTT
GTTTAGCAAATACCGAAACAATAGTTATTGACCACAGTATACCAAATGGAAGAGACCAGCAGCTGGGCGT
GGACCCAACAGAGCATTTATTTGAGAATGGCAGTGAGTTTCCCTCAGAGCTGGAGGACGGGGACGACCCA
GCAGCCTACGTCACCAACCTGTCATATTACCACCTGGTCCCCTTCGAGACAGACATTTGGGACTGA

Translation (231 aa):
MASAVFEGTSLVNMFVRGCWVNGIRRLIVSRRGDEEEFFEIRTEWSDRSVLYLHRSLADLGRLWQRLRDA
FPEDRSELAQGPLRQGLVAIKEAHDIETRLNEVEKLLKTIISMPCKYSRSEVVLTFFERSPLDQVLKNDN
VHKIQPSFQSPVKISEIMRSNGFCLANTETIVIDHSIPNGRDQQLGVDPTEHLFENGSEFPSELEDGDDP
AAYVTNLSYYHLVPFETDIWD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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