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Report for CCDS5535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5535.1 Public Homo sapiens 7 RABGEF1 24 110 108 CCDS HistoryNCBI Gene:27342Re-query CCDS DB by CCDS ID:5535.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5535.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000284957.9 ENSP00000284957.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000284957.9Link to Ensembl Protein Viewer:ENSP00000284957.4Re-query CCDS DB by Nucleotide ID:ENST00000284957Re-query CCDS DB by Protein ID:ENSP00000284957
Original member Current member EBI ENST00000450873.6 ENSP00000415815.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000450873.6Link to Ensembl Protein Viewer:ENSP00000415815.1Re-query CCDS DB by Nucleotide ID:ENST00000450873Re-query CCDS DB by Protein ID:ENSP00000415815
Original member Current member NCBI NM_001287062.2 NP_001273991.1 Accepted alive Link to Nucleotide Sequence:NM_001287062.2Link to Protein Sequence:NP_001273991.1Re-query CCDS DB by Nucleotide ID:NM_001287062Re-query CCDS DB by Protein ID:NP_001273991Link to BLAST:NP_001273991.1
Original member Current member NCBI NM_001367725.1 NP_001354654.1 Accepted alive Link to Nucleotide Sequence:NM_001367725.1Link to Protein Sequence:NP_001354654.1Re-query CCDS DB by Nucleotide ID:NM_001367725Re-query CCDS DB by Protein ID:NP_001354654Link to BLAST:NP_001354654.1
Original member Current member NCBI NM_001367726.1 NP_001354655.1 Accepted alive Link to Nucleotide Sequence:NM_001367726.1Link to Protein Sequence:NP_001354655.1Re-query CCDS DB by Nucleotide ID:NM_001367726Re-query CCDS DB by Protein ID:NP_001354655Link to BLAST:NP_001354655.1
Original member Current member NCBI NM_001367727.1 NP_001354656.1 Accepted alive Link to Nucleotide Sequence:NM_001367727.1Link to Protein Sequence:NP_001354656.1Re-query CCDS DB by Nucleotide ID:NM_001367727Re-query CCDS DB by Protein ID:NP_001354656Link to BLAST:NP_001354656.1
Original member Current member NCBI NM_001367728.1 NP_001354657.1 Accepted alive Link to Nucleotide Sequence:NM_001367728.1Link to Protein Sequence:NP_001354657.1Re-query CCDS DB by Nucleotide ID:NM_001367728Re-query CCDS DB by Protein ID:NP_001354657Link to BLAST:NP_001354657.1
Original member Current member NCBI NM_001367729.1 NP_001354658.1 Accepted alive Link to Nucleotide Sequence:NM_001367729.1Link to Protein Sequence:NP_001354658.1Re-query CCDS DB by Nucleotide ID:NM_001367729Re-query CCDS DB by Protein ID:NP_001354658Link to BLAST:NP_001354658.1
Original member Current member NCBI NM_001367730.1 NP_001354659.1 Accepted alive Link to Nucleotide Sequence:NM_001367730.1Link to Protein Sequence:NP_001354659.1Re-query CCDS DB by Nucleotide ID:NM_001367730Re-query CCDS DB by Protein ID:NP_001354659Link to BLAST:NP_001354659.1
Original member Current member NCBI NM_001367731.1 NP_001354660.1 Accepted alive Link to Nucleotide Sequence:NM_001367731.1Link to Protein Sequence:NP_001354660.1Re-query CCDS DB by Nucleotide ID:NM_001367731Re-query CCDS DB by Protein ID:NP_001354660Link to BLAST:NP_001354660.1
Original member Current member NCBI NM_001367732.1 NP_001354661.1 Accepted alive Link to Nucleotide Sequence:NM_001367732.1Link to Protein Sequence:NP_001354661.1Re-query CCDS DB by Nucleotide ID:NM_001367732Re-query CCDS DB by Protein ID:NP_001354661Link to BLAST:NP_001354661.1
Original member Current member NCBI NM_001367733.1 NP_001354662.1 Accepted alive Link to Nucleotide Sequence:NM_001367733.1Link to Protein Sequence:NP_001354662.1Re-query CCDS DB by Nucleotide ID:NM_001367733Re-query CCDS DB by Protein ID:NP_001354662Link to BLAST:NP_001354662.1
Original member Current member NCBI NM_001367734.1 NP_001354663.1 Accepted alive Link to Nucleotide Sequence:NM_001367734.1Link to Protein Sequence:NP_001354663.1Re-query CCDS DB by Nucleotide ID:NM_001367734Re-query CCDS DB by Protein ID:NP_001354663Link to BLAST:NP_001354663.1
Original member Current member NCBI NM_001367735.1 NP_001354664.1 Accepted alive Link to Nucleotide Sequence:NM_001367735.1Link to Protein Sequence:NP_001354664.1Re-query CCDS DB by Nucleotide ID:NM_001367735Re-query CCDS DB by Protein ID:NP_001354664Link to BLAST:NP_001354664.1
Original member Current member NCBI NM_001367736.1 NP_001354665.1 Accepted alive Link to Nucleotide Sequence:NM_001367736.1Link to Protein Sequence:NP_001354665.1Re-query CCDS DB by Nucleotide ID:NM_001367736Re-query CCDS DB by Protein ID:NP_001354665Link to BLAST:NP_001354665.1
Original member Current member NCBI NM_014504.3 NP_055319.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014504.3Link to Protein Sequence:NP_055319.1Re-query CCDS DB by Nucleotide ID:NM_014504Re-query CCDS DB by Protein ID:NP_055319Link to BLAST:NP_055319.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273991.1 491 Q9UJ41-2 491 100% 0 0
NP_001354654.1 491 Q9UJ41-2 491 100% 0 0
NP_001354655.1 491 Q9UJ41-2 491 100% 0 0
NP_001354656.1 491 Q9UJ41-2 491 100% 0 0
NP_001354657.1 491 Q9UJ41-2 491 100% 0 0
NP_001354658.1 491 Q9UJ41-2 491 100% 0 0
NP_001354659.1 491 Q9UJ41-2 491 100% 0 0
NP_001354660.1 491 Q9UJ41-2 491 100% 0 0
NP_001354661.1 491 Q9UJ41-2 491 100% 0 0
NP_001354662.1 491 Q9UJ41-2 491 100% 0 0
NP_001354663.1 491 Q9UJ41-2 491 100% 0 0
NP_001354664.1 491 Q9UJ41-2 491 100% 0 0
NP_001354665.1 491 Q9UJ41-2 491 100% 0 0
NP_055319.1 491 Q9UJ41-2 491 100% 0 0

Chromosomal Locations for CCDS 5535.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 66771900 66772078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66775227 66775393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66783675 66783841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66795511 66795592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66797374 66797506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66799323 66799414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66805140 66805396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66808886 66809284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGAGCCTTAAGTCTGAACGCCGAGGAATTCATGTGGATCAATCGGATCTCCTGTGCAAGAAAGGATGTG
GTTACTACGGCAACCCTGCCTGGCAGGGTTTCTGCTCCAAGTGCTGGAGGGAAGAGTACCACAAAGCCAG
GCAGAAGCAGATTCAGGAGGACTGGGAGCTGGCGGAGCGACTCCAGCGGGAGGAAGAAGAGGCCTTTGCC
AGCAGTCAGAGCAGCCAAGGGGCCCAATCCCTCACATTCTCCAAGTTTGAAGAAAAGAAAACCAACGAGA
AGACCCGCAAGGTTACCACAGTGAAGAAATTCTTCAGTGCATCTTCCAGGGTCGGATCAAAGAAGGAAAT
TCAGGAAGCAAAAGCTCCCAGTCCTTCCATAAACCGGCAAACCAGCATTGAAACGGATAGAGTGTCTAAG
GAGTTCATAGAATTTCTCAAGACCTTCCACAAGACAGGCCAAGAAATCTATAAACAGACCAAGCTGTTTT
TGGAAGGAATGCATTACAAAAGGGATCTAAGCATTGAAGAACAGTCAGAGTGTGCTCAGGATTTCTACCA
CAATGTGGCCGAAAGGATGCAAACTCGTGGGAAAGTGCCTCCAGAAAGAGTCGAGAAGATAATGGATCAG
ATTGAAAAGTACATCATGACTCGTCTCTATAAATATGTATTCTGTCCAGAAACTACTGATGATGAGAAGA
AAGATCTTGCCATTCAAAAGAGAATCAGAGCCCTGCGCTGGGTTACGCCTCAGATGCTGTGTGTCCCTGT
TAATGAAGACATCCCAGAAGTGTCTGATATGGTGGTGAAGGCGATCACAGATATCATTGAAATGGATTCC
AAGCGTGTGCCTCGAGACAAGCTGGCCTGCATCACCAAGTGCAGCAAGCACATCTTCAATGCCATCAAGA
TCACCAAGAATGAGCCGGCGTCAGCGGATGACTTCCTCCCCACCCTCATCTACATTGTTTTGAAGGGCAA
CCCCCCACGCCTTCAGTCTAATATCCAGTATATCACGCGCTTCTGCAATCCAAGCCGACTGATGACTGGA
GAGGATGGCTACTATTTCACCAATCTGTGCTGTGCTGTGGCTTTCATTGAGAAGCTAGACGCCCAGTCTT
TGAATCTAAGTCAGGAGGATTTTGATCGCTACATGTCTGGCCAGACCTCTCCCAGGAAGCAAGAAGCTGA
GAGTTGGTCTCCTGATGCTTGCTTAGGCGTCAAGCAAATGTATAAGAACTTGGATCTCTTGTCTCAGTTG
AATGAACGACAAGAAAGGATCATGAATGAAGCCAAGAAACTGGAAAAAGACCTCATAGATTGGACAGATG
GAATTGCAAGAGAAGTTCAAGACATCGTTGAGAAATACCCACTGGAAATTAAGCCTCCGAATCAACCGTT
AGCAGCTATTGACTCTGAAAACGTTGAAAATGATAAACTTCCTCCACCACTGCAACCTCAAGTTTATGCA
GGATGA

Translation (491 aa):
MSLKSERRGIHVDQSDLLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAERLQREEEEAFA
SSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFSASSRVGSKKEIQEAKAPSPSINRQTSIETDRVSK
EFIEFLKTFHKTGQEIYKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQ
IEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDS
KRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTG
EDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQEAESWSPDACLGVKQMYKNLDLLSQL
NERQERIMNEAKKLEKDLIDWTDGIAREVQDIVEKYPLEIKPPNQPLAAIDSENVENDKLPPPLQPQVYA
G


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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