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Report for CCDS5411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5411.1 Public Homo sapiens 7 HOXA11 24 110 108 CCDS HistoryNCBI Gene:3207Re-query CCDS DB by CCDS ID:5411.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5411.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000006015.4 ENSP00000006015.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000006015.4Link to Ensembl Protein Viewer:ENSP00000006015.3Re-query CCDS DB by Nucleotide ID:ENST00000006015Re-query CCDS DB by Protein ID:ENSP00000006015
Original member Current member NCBI NM_005523.6 NP_005514.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005523.6Link to Protein Sequence:NP_005514.1Re-query CCDS DB by Nucleotide ID:NM_005523Re-query CCDS DB by Protein ID:NP_005514Link to BLAST:NP_005514.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005514.1 313 P31270 313 100% 0 0

Chromosomal Locations for CCDS 5411.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27182796 27183028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27184436 27185144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGATTTTGATGAGCGTGGTCCCTGCTCCTCTAACATGTATTTGCCAAGTTGTACTTACTACGTCTCGG
GTCCAGATTTCTCCAGCCTCCCTTCTTTTCTGCCCCAGACCCCGTCTTCGCGCCCAATGACATACTCCTA
CTCCTCCAACCTGCCCCAGGTCCAACCCGTGCGCGAAGTGACCTTCAGAGAGTACGCCATTGAGCCCGCC
ACTAAATGGCACCCCCGCGGCAATCTGGCCCACTGCTACTCCGCGGAGGAGCTCGTGCACAGAGACTGCC
TGCAGGCGCCCAGCGCGGCCGGCGTGCCTGGCGACGTGCTGGCCAAGAGCTCGGCCAACGTCTACCACCA
CCCCACCCCCGCAGTCTCGTCCAATTTCTATAGCACCGTGGGCAGGAACGGCGTCCTGCCACAGGCTTTC
GACCAGTTTTTCGAGACAGCCTACGGCACCCCGGAAAACCTCGCCTCCTCCGACTACCCCGGGGACAAGA
GCGCCGAGAAGGGGCCCCCGGCGGCCACGGCGACCTCCGCGGCGGCGGCGGCGGCTGCAACGGGCGCGCC
GGCAACTTCAAGTTCGGACAGCGGCGGCGGCGGCGGCTGCCGGGAGACGGCGGCGGCAGCAGAGGAGAAA
GAGCGGCGGCGGCGCCCCGAGAGCAGCAGCAGCCCCGAGTCGTCTTCCGGCCACACTGAGGACAAGGCCG
GCGGCTCCAGTGGCCAACGCACCCGCAAAAAGCGCTGCCCCTATACCAAGTACCAGATCCGAGAGCTGGA
ACGGGAGTTCTTCTTCAGCGTCTACATTAACAAAGAGAAGCGCCTGCAACTGTCCCGCATGCTCAACCTC
ACTGATCGTCAAGTCAAAATCTGGTTTCAGAACAGGAGAATGAAGGAAAAAAAAATTAACAGAGACCGTT
TACAGTACTACTCAGCAAATCCACTCCTCTAA

Translation (313 aa):
MDFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREVTFREYAIEPA
TKWHPRGNLAHCYSAEELVHRDCLQAPSAAGVPGDVLAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAF
DQFFETAYGTPENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEK
ERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNL
TDRQVKIWFQNRRMKEKKINRDRLQYYSANPLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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