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Report for CCDS42400.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42400.1 Public Homo sapiens 17 CCDC137 24 110 108 CCDS HistoryNCBI Gene:339230Re-query CCDS DB by CCDS ID:42400.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42400.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329214.13 ENSP00000329360.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000329214.13Link to Ensembl Protein Viewer:ENSP00000329360.8Re-query CCDS DB by Nucleotide ID:ENST00000329214Re-query CCDS DB by Protein ID:ENSP00000329360
Original member Current member EBI ENST00000575223.5 ENSP00000458884.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000575223.5Link to Ensembl Protein Viewer:ENSP00000458884.1Re-query CCDS DB by Nucleotide ID:ENST00000575223Re-query CCDS DB by Protein ID:ENSP00000458884
Original member Current member NCBI NM_199287.3 NP_954981.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_199287.3Link to Protein Sequence:NP_954981.1Re-query CCDS DB by Nucleotide ID:NM_199287Re-query CCDS DB by Protein ID:NP_954981Link to BLAST:NP_954981.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954981.1 289 Q6PK04 289 100% 0 0

Chromosomal Locations for CCDS 42400.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 81666767 81666900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81667729 81667862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81670225 81670453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81671744 81671826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81672076 81672155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81672495 81672704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGGCGGGAGCTGGTCGCGGAGCAGCGGTGTCCAGGGTGCAGGCGGGTCCTGGGAGTCCCCGGCGAGCGC
GGGGGCGGCAGCAAGTGCAGCCGCTGGGGAAGCAGCGCCCAGCCCCGTGGCCCGGGCTTCGCAGCAAAGA
GAAGAAGAAAGTGAACTGCAAGCCCAAGAACCAGGACGAACAGGAGATTCCTTTCCGGCTCCGGGAGATT
ATGAGGAGCCGCCAAGAGATGAAAAACCCGATCAGTAACAAGAAGAGGAAGAAAGCAGCCCAGGTGACCT
TCAGAAAGACATTGGAGAAGGAAGCAAAGGGAGAGGAGCCCGACATCGCAGTCCCCAAGTTCAAACAGAG
GAAGGGGGAGTCTGACGGGGCCTATATCCACCGCATGCAGCAAGAGGCCCAGCATGTGCTGTTCCTCAGC
AAGAACCAGGCCATCCGGCAGCCAGAGGTGCAGGCAGCTCCCAAGGAGAAGTCTGAGCAGAAAAAAGCAA
AAAAAGCGTTCCAGAAGCGGCGACTAGATAAAGTCCGACGGAAAAAGGAGGAAAAGGCGGCAGACAGGCT
GGAGCAGGAGTTGCTCCGAGACACGGTGAAGTTTGGTGAGGTTGTCCTGCAGCCCCCAGAGCTGACTGCC
AGGCCCCAGAGGAGCGTAAGCAAGGACCAGCCTGGCAGGAGATCGCAGATGCTGCGGATGCTTCTGAGCC
CCGGTGGTGTGTCCCAGCCTCTGACCGCCTCCCTGGCCCGCCAGCGGATTGTGGAGGAGGAGAGAGAGCG
GGCCGTGCAGGCCTACAGAGCGTTGAAGCAGCGGCAGCAGCAGCTGCACGGGGAGCGACCCCACCTCACT
TCCCGGAAGAAGCCAGAGCCGCAGCTGTGA

Translation (289 aa):
MAGAGRGAAVSRVQAGPGSPRRARGRQQVQPLGKQRPAPWPGLRSKEKKKVNCKPKNQDEQEIPFRLREI
MRSRQEMKNPISNKKRKKAAQVTFRKTLEKEAKGEEPDIAVPKFKQRKGESDGAYIHRMQQEAQHVLFLS
KNQAIRQPEVQAAPKEKSEQKKAKKAFQKRRLDKVRRKKEEKAADRLEQELLRDTVKFGEVVLQPPELTA
RPQRSVSKDQPGRRSQMLRMLLSPGGVSQPLTASLARQRIVEEERERAVQAYRALKQRQQQLHGERPHLT
SRKKPEPQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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