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Report for CCDS32519.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32519.2 Public Homo sapiens 17 LIAT1 24 110 108 CCDS HistoryNCBI Gene:400566Re-query CCDS DB by CCDS ID:32519.2See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 32519.2
The coding region has been updated to remove a 30-nt insert that is absent in the GRCh37 reference genome assembly. The CDS of this locus includes a tandem repeat sequence that is present 17 times in the reference genome assembly; the removed 30-nt insert corresponds to an additional repeat. Transcript data indicate that alleles contain variable copy numbers of this tandem repeat.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 32519.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360127.7 ENSP00000353245.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360127.7Link to Ensembl Protein Viewer:ENSP00000353245.6Re-query CCDS DB by Nucleotide ID:ENST00000360127Re-query CCDS DB by Protein ID:ENSP00000353245
Original member Current member NCBI NM_001013672.5 NP_001013694.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001013672.5Link to Protein Sequence:NP_001013694.4Re-query CCDS DB by Nucleotide ID:NM_001013672Re-query CCDS DB by Protein ID:NP_001013694Link to BLAST:NP_001013694.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013694.4 423 Q6ZQX7-4 423 100% 0 0

Chromosomal Locations for CCDS 32519.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 410343 410646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 413148 414115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGAGACGCGTGGCCCTGGCCTGGCGGTCCGCGCTGAGAGTCGCCGATTAGTCGGCATCGGGCCTCGGG
CGCCCCCGGGGCGGGTTGGGTTGCAGCCCAGCGGGCGGCTGGACCGCCGCGGTGGGGCGGGGACAATGGG
GTACAAGGACAACGACGGCGAGGAGGAGGAGCGGGAGGGCGGCGCCGCGGGCCCGCGGGGGTCTAGACTG
CCCCCCATCACAGGCGGCGCCTCCGAGCTGGCCAAACGGAAGGTGAAGAAGAAAAAAAGGAAGAAGAAGA
CCAAGGGGTCTGGCAAGGGGGACGATAAACATCAGAGTCAGAGCCTGAAGAGCCAGCCGCTTTCTTCCTC
CTTTCATGACATCTTAAGTCCTTGCAAAGAGCGTGGCCCGAAACCAGAGCACAGACAGAGCAAAGTGGAA
AAGAAGCACCTCCCTTCTGACTCCTCCACCGTCAGCCTCCCCGACTTTGCCGAAATAGAGAACCTTGCGA
ATCGGATCAACGAAAGTCTGCGTTGGGATGGAATTCTTGCTGACCCGGAGGCAGAGAAGGAAAGGATTCG
CATCTATAAACTGAATCGGAGAAAACGGTACCGGTGCTTGGCCCTCAAGGGCTTCCACCCCGACCCCGAG
GCCCTCAAGGGCTTCCACCCCGACCCCGACGCCCTCAAGGGCTTCCACCCCGACCCCGAGGCCCTCAAGG
GCTTCCACCCCGACCCCGAGGCCCTCAAGGGCATCCACCCCGACCCCGAGGCTCTCAAGGGCTTCCACCC
CGACCCCGAGGCCCTCAAGGGCTTCCACCCCGACCCTGAGGCCCTCAAGGGTTTCCACACTGACCCCGAG
GCCCTCAAGGGTTTCCACATTGACCCCGAGGCCCTCAAGGGCTTCCACCCCGACCCCAAGGCCCTCAAGG
GCTTCCACCCCGACCCCAAGGCCCTCAAGGGTTTCCACACTGACCCCGAGGCCCTCAAGGGCTTCCACCC
CGACCCCAAGGCCCTCAAGGGCTTCCACCCCGACCCCGAGGCCCTCAAGGGCTTCCACCCCGACCCCGAG
GCCCTCAAGGGCTTCCACCCCGACCCCGAGGCCCTCAAGGGCTTCCACACTGACCCCAATGCCGAGGAGG
CCCCTGAGAACTTACCCTACCTCTCGGACAAAGATGGCAGCTCCAGCCACAGGCAGCCCACGTCGAAAGC
CGAGTGCCCCAATCTCTGTTTTGAAGGAAACCTTACCCCAAAGCTTCTACACTCTGACTTAGCTCCTACT
CTGCTGGAGTGA

Translation (423 aa):
METRGPGLAVRAESRRLVGIGPRAPPGRVGLQPSGRLDRRGGAGTMGYKDNDGEEEEREGGAAGPRGSRL
PPITGGASELAKRKVKKKKRKKKTKGSGKGDDKHQSQSLKSQPLSSSFHDILSPCKERGPKPEHRQSKVE
KKHLPSDSSTVSLPDFAEIENLANRINESLRWDGILADPEAEKERIRIYKLNRRKRYRCLALKGFHPDPE
ALKGFHPDPDALKGFHPDPEALKGFHPDPEALKGIHPDPEALKGFHPDPEALKGFHPDPEALKGFHTDPE
ALKGFHIDPEALKGFHPDPKALKGFHPDPKALKGFHTDPEALKGFHPDPKALKGFHPDPEALKGFHPDPE
ALKGFHPDPEALKGFHTDPNAEEAPENLPYLSDKDGSSSHRQPTSKAECPNLCFEGNLTPKLLHSDLAPT
LLE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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