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Report for CCDS9303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9303.1 Public Homo sapiens 13 MIPEP 24 110 108 CCDS HistoryNCBI Gene:4285Re-query CCDS DB by CCDS ID:9303.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9303.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382172.4 ENSP00000371607.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382172.4Link to Ensembl Protein Viewer:ENSP00000371607.3Re-query CCDS DB by Nucleotide ID:ENST00000382172Re-query CCDS DB by Protein ID:ENSP00000371607
Original member Current member NCBI NM_005932.4 NP_005923.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005932.4Link to Protein Sequence:NP_005923.3Re-query CCDS DB by Nucleotide ID:NM_005932Re-query CCDS DB by Protein ID:NP_005923Link to BLAST:NP_005923.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005923.3 713 Q99797 713 100% 0 0

Chromosomal Locations for CCDS 9303.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23730348 23730445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23756545 23756618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23760096 23760217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23805950 23806069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23809850 23809924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23836240 23836349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23837552 23837756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23839649 23839726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23841335 23841488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23858860 23858912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23862302 23862362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23864141 23864189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23869292 23869448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23870013 23870195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23874846 23874909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23879268 23879354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23881699 23881787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23886333 23886506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23889132 23889320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2142 nt):
ATGCTGTGCGTCGGAAGGCTGGGCGGCTTGGGAGCCAGAGCAGCAGCTCTGCCGCCCCGCCGGGCGGGCC
GGGGAAGCCTCGAAGCCGGGATCCGGGCCCGAAGGGTCAGCACCAGCTGGTCTCCCGTGGGCGCCGCCTT
CAATGTCAAGCCCCAGGGCAGCCGCTTGGACCTGTTCGGCGAGCGCCGGGGTCTTTTTGGAGTTCCTGAG
CTGAGTGCCCCAGAAGGATTTCATATTGCACAAGAAAAAGCCTTGAGAAAGACAGAATTGCTTGTGGACC
GTGCATGTTCCACCCCACCTGGGCCCCAGACCGTGCTGATCTTCGATGAGCTCTCGGATTCCTTATGCAG
AGTGGCCGACTTGGCTGATTTTGTGAAAATCGCTCACCCTGAGCCAGCATTCAGAGAAGCTGCGGAAGAA
GCTTGTAGAAGTATTGGCACCATGGTAGAGAAGTTGAACACAAATGTGGATTTATATCAAAGTTTGCAAA
AATTACTAGCTGATAAAAAACTTGTGGATTCCCTTGATCCAGAAACAAGGCGAGTGGCTGAACTGTTTAT
GTTTGATTTTGAAATTAGTGGAATCCATCTAGACAAAGAAAAGCGTAAAAGAGCAGTGGACCTCAATGTT
AAAATCTTGGATTTGAGTAGTACATTTCTTATGGGAACCAATTTTCCCAACAAGATTGAGAAGCATCTCT
TACCAGAACACATTCGTCGTAACTTTACATCTGCTGGGGATCATATCATAATTGATGGTCTCCACGCAGA
ATCACCAGATGACTTGGTGCGAGAAGCTGCTTATAAAATTTTTCTTTATCCCAATGCTGGTCAATTGAAA
TGTTTAGAAGAATTGCTCAGCAGCAGAGATCTTCTGGCAAAGTTGGTGGGGTATTCCACGTTTTCTCACA
GGGCTCTCCAAGGAACGATAGCTAAAAATCCAGAGACTGTCATGCAGTTCCTTGAAAAACTATCTGACAA
ACTTTCTGAAAGAACTCTGAAAGATTTTGAGATGATACGAGGGATGAAAATGAAACTGAATCCTCAAAAT
TCCGAAGTAATGCCCTGGGACCCCCCTTACTACAGTGGTGTGATTCGTGCAGAAAGGTATAATATTGAGC
CCAGCCTATATTGCCCGTTTTTCTCTCTTGGAGCATGCATGGAAGGCCTGAATATTTTGCTTAACAGACT
GTTGGGGATTTCATTATATGCAGAGCAGCCTGCAAAAGGAGAGGTGTGGAGCGAAGATGTCCGAAAACTG
GCTGTTGTTCATGAATCTGAAGGATTGTTGGGGTACATTTACTGTGATTTTTTTCAGCGAGCAGACAAAC
CACATCAGGATTGCCATTTCACTATCCGTGGAGGCAGACTAAAGGAAGATGGAGACTATCAACTCCCAGT
TGTAGTTCTTATGCTGAATCTTCCCCGTTCCTCAAGGAGTTCTCCAACTTTGCTAACTCCTAGCATGATG
GAAAATCTTTTCCATGAAATGGGACATGCCATGCATTCAATGCTAGGACGTACTCGTTACCAACACGTCA
CTGGGACCAGGTGCCCTACTGATTTTGCTGAGGTTCCTTCTATTCTGATGGAGTACTTTGCAAATGATTA
TCGAGTAGTTAACCAATTTGCCAGACATTATCAGACTGGACAGCCACTGCCAAAAAATATGGTGTCTCGT
CTTTGTGAATCTAAAAAGGTTTGTGCTGCAGCTGATATGCAACTTCAGGTCTTTTATGCCACTCTGGATC
AAATCTACCATGGGAAGCATCCCCTGAGGAATTCAACCACAGACATTCTCAAGGAAACACAAGAGAAATT
CTATGGCCTACCATATGTTCCAAATACTGCCTGGCAGCTGCGATTCAGCCACCTCGTGGGGTATGGTGCT
AGATATTACTCTTACCTCATGTCCAGAGCGGTCGCCTCCATGGTTTGGAAGGAGTGTTTTCTACAGGATC
CTTTCAACAGGGCTGCCGGGGAGCGCTATCGCAGGGAGATGCTGGCCCACGGTGGAGGCAGGGAGCCCAT
GCTCATGGTTGAAGGTATGCTTCAGAAGTGTCCTTCTGTTGATGACTTCGTAAGTGCCCTCGTTTCCGAC
TTGGATCTGGACTTCGAAACTTTCCTCATGGATTCTGAATAA

Translation (713 aa):
MLCVGRLGGLGARAAALPPRRAGRGSLEAGIRARRVSTSWSPVGAAFNVKPQGSRLDLFGERRGLFGVPE
LSAPEGFHIAQEKALRKTELLVDRACSTPPGPQTVLIFDELSDSLCRVADLADFVKIAHPEPAFREAAEE
ACRSIGTMVEKLNTNVDLYQSLQKLLADKKLVDSLDPETRRVAELFMFDFEISGIHLDKEKRKRAVDLNV
KILDLSSTFLMGTNFPNKIEKHLLPEHIRRNFTSAGDHIIIDGLHAESPDDLVREAAYKIFLYPNAGQLK
CLEELLSSRDLLAKLVGYSTFSHRALQGTIAKNPETVMQFLEKLSDKLSERTLKDFEMIRGMKMKLNPQN
SEVMPWDPPYYSGVIRAERYNIEPSLYCPFFSLGACMEGLNILLNRLLGISLYAEQPAKGEVWSEDVRKL
AVVHESEGLLGYIYCDFFQRADKPHQDCHFTIRGGRLKEDGDYQLPVVVLMLNLPRSSRSSPTLLTPSMM
ENLFHEMGHAMHSMLGRTRYQHVTGTRCPTDFAEVPSILMEYFANDYRVVNQFARHYQTGQPLPKNMVSR
LCESKKVCAAADMQLQVFYATLDQIYHGKHPLRNSTTDILKETQEKFYGLPYVPNTAWQLRFSHLVGYGA
RYYSYLMSRAVASMVWKECFLQDPFNRAAGERYRREMLAHGGGREPMLMVEGMLQKCPSVDDFVSALVSD
LDLDFETFLMDSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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