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Report for CCDS7549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7549.1 Public Homo sapiens 10 CALHM2 24 110 108 CCDS HistoryNCBI Gene:51063Re-query CCDS DB by CCDS ID:7549.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7549.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260743.10 ENSP00000260743.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000260743.10Link to Ensembl Protein Viewer:ENSP00000260743.5Re-query CCDS DB by Nucleotide ID:ENST00000260743Re-query CCDS DB by Protein ID:ENSP00000260743
Original member Current member EBI ENST00000369788.7 ENSP00000358803.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369788.7Link to Ensembl Protein Viewer:ENSP00000358803.3Re-query CCDS DB by Nucleotide ID:ENST00000369788Re-query CCDS DB by Protein ID:ENSP00000358803
Original member Current member NCBI NM_015916.5 NP_057000.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015916.5Link to Protein Sequence:NP_057000.2Re-query CCDS DB by Nucleotide ID:NM_015916Re-query CCDS DB by Protein ID:NP_057000Link to BLAST:NP_057000.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057000.2 323 Q9HA72-1 323 100% 0 0

Chromosomal Locations for CCDS 7549.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 103447152 103447568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103449387 103449941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGCAGCCCTGATCGCAGAGAACTTCCGCTTCCTGTCACTTTTCTTCAAGAGCAAGGATGTGATGATTT
TCAACGGCCTGGTGGCACTGGGCACGGTGGGCAGCCAGGAGCTGTTCTCTGTGGTGGCCTTCCACTGCCC
CTGCTCGCCGGCCCGGAACTACCTGTACGGGCTGGCGGCCATCGGCGTGCCCGCCCTGGTGCTCTTCATC
ATTGGCATCATCCTCAACAACCACACCTGGAACCTCGTGGCCGAGTGCCAGCACCGGAGGACCAAGAACT
GCTCCGCCGCCCCCACCTTCCTCCTTCTAAGCTCCATCCTGGGACGTGCGGCTGTGGCCCCTGTCACCTG
GTCTGTCATCTCCCTGCTGCGTGGTGAGGCTTATGTCTGTGCTCTCAGTGAGTTCGTGGACCCTTCCTCA
CTCACGGCCAGGGAAGAGCACTTCCCATCAGCCCACGCCACTGAAATCCTGGCCAGGTTCCCCTGCAAGG
AGAACCCTGACAACCTGTCAGACTTCCGGGAGGAGGTCAGCCGCAGGCTCAGGTATGAGTCCCAGCTCTT
TGGATGGCTGCTCATCGGCGTGGTGGCCATCCTGGTGTTCCTGACCAAGTGCCTCAAGCATTACTGCTCA
CCACTCAGCTACCGCCAGGAGGCCTACTGGGCGCAGTACCGCGCCAATGAGGACCAGCTGTTCCAGCGCA
CGGCCGAGGTGCACTCTCGGGTGCTCGCTGCCAACAATGTGCGCCGCTTCTTTGGCTTTGTGGCGCTCAA
CAAGGATGATGAGGAACTGATTGCCAACTTCCCAGTGGAAGGCACGCAGCCACGGCCACAGTGGAATGCC
ATCACCGGCGTCTACTTGTACCGTGAGAACCAGGGCCTCCCACTCTACAGCCGCCTGCACAAGTGGGCCC
AGGGTCTGGCAGGCAACGGCGCGGCCCCTGACAACGTGGAGATGGCCCTGCTCCCCTCCTAA

Translation (323 aa):
MAALIAENFRFLSLFFKSKDVMIFNGLVALGTVGSQELFSVVAFHCPCSPARNYLYGLAAIGVPALVLFI
IGIILNNHTWNLVAECQHRRTKNCSAAPTFLLLSSILGRAAVAPVTWSVISLLRGEAYVCALSEFVDPSS
LTAREEHFPSAHATEILARFPCKENPDNLSDFREEVSRRLRYESQLFGWLLIGVVAILVFLTKCLKHYCS
PLSYRQEAYWAQYRANEDQLFQRTAEVHSRVLAANNVRRFFGFVALNKDDEELIANFPVEGTQPRPQWNA
ITGVYLYRENQGLPLYSRLHKWAQGLAGNGAAPDNVEMALLPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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