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Report for CCDS5388.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5388.1 Public Homo sapiens 7 PALS2 24 110 108 CCDS HistoryNCBI Gene:51678Re-query CCDS DB by CCDS ID:5388.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5388.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000222644.10 ENSP00000222644.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000222644.10Link to Ensembl Protein Viewer:ENSP00000222644.4Re-query CCDS DB by Nucleotide ID:ENST00000222644Re-query CCDS DB by Protein ID:ENSP00000222644
Original member Current member EBI ENST00000396475.6 ENSP00000379737.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396475.6Link to Ensembl Protein Viewer:ENSP00000379737.2Re-query CCDS DB by Nucleotide ID:ENST00000396475Re-query CCDS DB by Protein ID:ENSP00000379737
Original member Current member NCBI NM_001303037.2 NP_001289966.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001303037.2Link to Protein Sequence:NP_001289966.1Re-query CCDS DB by Nucleotide ID:NM_001303037Re-query CCDS DB by Protein ID:NP_001289966Link to BLAST:NP_001289966.1
Original member Current member NCBI NM_016447.4 NP_057531.2 Accepted alive Link to Nucleotide Sequence:NM_016447.4Link to Protein Sequence:NP_057531.2Re-query CCDS DB by Nucleotide ID:NM_016447Re-query CCDS DB by Protein ID:NP_057531Link to BLAST:NP_057531.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289966.1 540 Q9NZW5 540 100% 0 0
NP_057531.2 540 Q9NZW5 540 100% 0 0

Chromosomal Locations for CCDS 5388.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 24623668 24623784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24641716 24641868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24649612 24649764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24650485 24650712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24663590 24663721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24665588 24665687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24666021 24666089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24668499 24668660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24679131 24679333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24680392 24680520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24687438 24687614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1623 nt):
ATGCAGCAAGTCTTGGAAAACCTTACGGAGCTGCCCTCGTCTACTGGAGCAGAAGAAATAGACCTAATTT
TCCTCAAGGGAATTATGGAGAATCCTATTGTAAAATCACTTGCTAAGGCTCATGAGAGGCTAGAAGATTC
CAAACTAGAAGCTGTCAGTGACAATAACTTGGAATTAGTCAATGAAATTCTTGAAGACATCACTCCTCTA
ATAAATGTGGATGAAAATGTGGCAGAATTGGTTGGTATACTCAAAGAACCTCACTTCCAGTCACTGTTGG
AGGCCCATGATATTGTGGCATCAAAGTGTTATGATTCACCTCCATCAAGCCCAGAAATGAATAATTCTTC
TATCAATAATCAGTTATTACCAGTAGATGCCATTCGTATTCTTGGTATTCACAAAAGAGCTGGGGAACCA
CTGGGTGTGACATTTAGGGTTGAAAATAATGATCTGGTAATTGCCCGAATCCTCCATGGGGGAATGATAG
ATCGACAAGGTCTACTTCATGTGGGAGATATAATTAAAGAAGTCAATGGCCATGAGGTTGGAAATAATCC
AAAGGAATTACAAGAATTACTGAAAAATATTAGTGGAAGTGTCACCCTAAAAATCTTACCAAGTTATAGA
GATACCATTACTCCTCAACAGGTATTTGTGAAGTGTCATTTTGATTATAATCCATACAATGACAACCTAA
TACCTTGCAAAGAAGCAGGATTGAAGTTTTCCAAAGGAGAGATTCTTCAGATTGTAAATAGAGAAGATCC
AAATTGGTGGCAGGCTAGCCATGTAAAAGAGGGAGGAAGCGCTGGTCTCATTCCAAGCCAGTTCCTGGAA
GAGAAGAGAAAGGCATTTGTTAGAAGAGACTGGGACAATTCAGGACCTTTTTGTGGAACTATAAGTAGCA
AAAAAAAGAAAAAGATGATGTATCTCACAACCAGAAATGCAGAATTTGATCGTCATGAAATCCAGATATA
TGAGGAGGTAGCCAAAATGCCTCCCTTCCAGAGAAAAACATTAGTATTGATAGGAGCTCAAGGTGTAGGC
CGAAGAAGCTTGAAAAACAGGTTCATAGTATTGAATCCCACTAGATTTGGAACTACGGTGCCATTTACTT
CACGGAAACCAAGGGAAGATGAAAAAGATGGCCAGGCATATAAGTTTGTGTCACGATCTGAGATGGAAGC
AGATATTAAAGCTGGAAAGTATTTGGAACATGGGGAATATGAAGGAAATCTCTATGGAACCAAAATTGAT
TCTATTCTTGAGGTTGTCCAAACTGGACGGACTTGCATTCTGGATGTCAACCCACAAGCACTGAAAGTAT
TGAGGACATCAGAGTTTATGCCCTATGTGGTATTTATTGCGGCTCCGGAGCTAGAGACGTTACGTGCCAT
GCACAAGGCTGTGGTGGATGCAGGAATCACTACCAAGCTTCTGACCGACTCTGACTTGAAGAAAACAGTG
GATGAAAGTGCACGGATTCAGAGAGCATACAACCACTATTTTGATTTGATCATCATAAATGATAATCTAG
ACAAAGCCTTTGAAAAACTGCAAACTGCCATAGAGAAACTGAGAATGGAACCACAGTGGGTCCCAATCAG
CTGGGTTTACTGA

Translation (540 aa):
MQQVLENLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEILEDITPL
INVDENVAELVGILKEPHFQSLLEAHDIVASKCYDSPPSSPEMNNSSINNQLLPVDAIRILGIHKRAGEP
LGVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVGNNPKELQELLKNISGSVTLKILPSYR
DTITPQQVFVKCHFDYNPYNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLE
EKRKAFVRRDWDNSGPFCGTISSKKKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVG
RRSLKNRFIVLNPTRFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKID
SILEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTV
DESARIQRAYNHYFDLIIINDNLDKAFEKLQTAIEKLRMEPQWVPISWVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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