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Report for CCDS4962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4962.1 Public Homo sapiens 6 RAB23 24 110 108 CCDS HistoryNCBI Gene:51715Re-query CCDS DB by CCDS ID:4962.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4962.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317483.4 ENSP00000320413.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000317483.4Link to Ensembl Protein Viewer:ENSP00000320413.3Re-query CCDS DB by Nucleotide ID:ENST00000317483Re-query CCDS DB by Protein ID:ENSP00000320413
Original member Current member EBI ENST00000468148.6 ENSP00000417610.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000468148.6Link to Ensembl Protein Viewer:ENSP00000417610.1Re-query CCDS DB by Nucleotide ID:ENST00000468148Re-query CCDS DB by Protein ID:ENSP00000417610
Original member Current member NCBI NM_001278666.2 NP_001265595.1 Accepted alive Link to Nucleotide Sequence:NM_001278666.2Link to Protein Sequence:NP_001265595.1Re-query CCDS DB by Nucleotide ID:NM_001278666Re-query CCDS DB by Protein ID:NP_001265595Link to BLAST:NP_001265595.1
Original member Current member NCBI NM_001278667.2 NP_001265596.1 Accepted alive Link to Nucleotide Sequence:NM_001278667.2Link to Protein Sequence:NP_001265596.1Re-query CCDS DB by Nucleotide ID:NM_001278667Re-query CCDS DB by Protein ID:NP_001265596Link to BLAST:NP_001265596.1
Original member Current member NCBI NM_001278668.2 NP_001265597.1 Accepted alive Link to Nucleotide Sequence:NM_001278668.2Link to Protein Sequence:NP_001265597.1Re-query CCDS DB by Nucleotide ID:NM_001278668Re-query CCDS DB by Protein ID:NP_001265597Link to BLAST:NP_001265597.1
Original member Current member NCBI NM_016277.5 NP_057361.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016277.5Link to Protein Sequence:NP_057361.3Re-query CCDS DB by Nucleotide ID:NM_016277Re-query CCDS DB by Protein ID:NP_057361Link to BLAST:NP_057361.3
Original member Current member NCBI NM_183227.3 NP_899050.1 Accepted alive Link to Nucleotide Sequence:NM_183227.3Link to Protein Sequence:NP_899050.1Re-query CCDS DB by Nucleotide ID:NM_183227Re-query CCDS DB by Protein ID:NP_899050Link to BLAST:NP_899050.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265595.1 237 Q9ULC3 237 100% 0 0
NP_001265596.1 237 Q9ULC3 237 100% 0 0
NP_001265597.1 237 Q9ULC3 237 100% 0 0
NP_057361.3 237 Q9ULC3 237 100% 0 0
NP_899050.1 237 Q9ULC3 237 100% 0 0

Chromosomal Locations for CCDS 4962.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 57190461 57190600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57193842 57193934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57194770 57194852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57196450 57196606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57207628 57207713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57210226 57210380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGTTGGAGGAAGATATGGAAGTCGCCATAAAGATGGTGGTTGTAGGGAATGGAGCAGTTGGAAAATCAA
GTATGATTCAGCGATATTGCAAAGGCATTTTTACAAAAGACTACAAGAAAACCATTGGAGTTGATTTTTT
GGAGCGACAAATTCAAGTTAATGATGAAGATGTCAGACTAATGTTATGGGACACTGCAGGTCAGGAGGAA
TTTGATGCAATTACAAAGGCCTACTATCGAGGAGCCCAGGCTTGTGTGCTCGTGTTCTCTACCACAGATA
GGGAATCTTTTGAAGCAGTTTCCAGTTGGAGAGAGAAAGTAGTAGCCGAAGTGGGAGATATACCAACTGT
ACTTGTGCAAAACAAGATTGATCTTCTGGATGATTCTTGTATAAAGAATGAGGAAGCTGAGGCACTGGCA
AAAAGGTTAAAGTTAAGATTCTACAGAACATCAGTGAAAGAAGATCTAAATGTGAATGAAGTTTTTAAGT
ATTTGGCTGAAAAATACCTTCAGAAACTCAAACAACAAATAGCTGAGGATCCAGAACTAACGCATTCAAG
TAGTAACAAGATTGGTGTCTTTAATACATCTGGTGGAAGTCACTCCGGTCAGAATTCAGGTACCCTCAAT
GGTGGAGATGTCATCAATCTTAGACCCAACAAACAAAGGACCAAGAAAAACAGAAATCCTTTTAGCAGCT
GTAGCATACCCTAA

Translation (237 aa):
MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE
FDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQNKIDLLDDSCIKNEEAEALA
KRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLN
GGDVINLRPNKQRTKKNRNPFSSCSIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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