NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2787.1 Public Homo sapiens 3 QRICH1 24 110 108 CCDS HistoryNCBI Gene:54870Re-query CCDS DB by CCDS ID:2787.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2787.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357496.6 ENSP00000350094.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357496.6Link to Ensembl Protein Viewer:ENSP00000350094.2Re-query CCDS DB by Nucleotide ID:ENST00000357496Re-query CCDS DB by Protein ID:ENSP00000350094
Original member Current member EBI ENST00000395443.7 ENSP00000378830.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395443.7Link to Ensembl Protein Viewer:ENSP00000378830.2Re-query CCDS DB by Nucleotide ID:ENST00000395443Re-query CCDS DB by Protein ID:ENSP00000378830
Original member Current member EBI ENST00000411682.2 ENSP00000412870.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000411682.2Link to Ensembl Protein Viewer:ENSP00000412870.2Re-query CCDS DB by Nucleotide ID:ENST00000411682Re-query CCDS DB by Protein ID:ENSP00000412870
Original member Current member EBI ENST00000424300.5 ENSP00000412890.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424300.5Link to Ensembl Protein Viewer:ENSP00000412890.1Re-query CCDS DB by Nucleotide ID:ENST00000424300Re-query CCDS DB by Protein ID:ENSP00000412890
Original member Current member EBI ENST00000703871.1 ENSP00000515516.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000703871.1Link to Ensembl Protein Viewer:ENSP00000515516.1Re-query CCDS DB by Nucleotide ID:ENST00000703871Re-query CCDS DB by Protein ID:ENSP00000515516
Original member Current member EBI ENST00000703942.1 ENSP00000515573.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000703942.1Link to Ensembl Protein Viewer:ENSP00000515573.1Re-query CCDS DB by Nucleotide ID:ENST00000703942Re-query CCDS DB by Protein ID:ENSP00000515573
Original member Current member NCBI NM_001320580.2 NP_001307509.1 Accepted alive Link to Nucleotide Sequence:NM_001320580.2Link to Protein Sequence:NP_001307509.1Re-query CCDS DB by Nucleotide ID:NM_001320580Re-query CCDS DB by Protein ID:NP_001307509Link to BLAST:NP_001307509.1
Original member Current member NCBI NM_001320581.2 NP_001307510.1 Accepted alive Link to Nucleotide Sequence:NM_001320581.2Link to Protein Sequence:NP_001307510.1Re-query CCDS DB by Nucleotide ID:NM_001320581Re-query CCDS DB by Protein ID:NP_001307510Link to BLAST:NP_001307510.1
Original member Current member NCBI NM_001320582.2 NP_001307511.1 Accepted alive Link to Nucleotide Sequence:NM_001320582.2Link to Protein Sequence:NP_001307511.1Re-query CCDS DB by Nucleotide ID:NM_001320582Re-query CCDS DB by Protein ID:NP_001307511Link to BLAST:NP_001307511.1
Original member Current member NCBI NM_001320583.2 NP_001307512.1 Accepted alive Link to Nucleotide Sequence:NM_001320583.2Link to Protein Sequence:NP_001307512.1Re-query CCDS DB by Nucleotide ID:NM_001320583Re-query CCDS DB by Protein ID:NP_001307512Link to BLAST:NP_001307512.1
Original member Current member NCBI NM_001320584.1 NP_001307513.1 Accepted alive Link to Nucleotide Sequence:NM_001320584.1Link to Protein Sequence:NP_001307513.1Re-query CCDS DB by Nucleotide ID:NM_001320584Re-query CCDS DB by Protein ID:NP_001307513Link to BLAST:NP_001307513.1
Original member Current member NCBI NM_001320585.1 NP_001307514.1 Accepted alive Link to Nucleotide Sequence:NM_001320585.1Link to Protein Sequence:NP_001307514.1Re-query CCDS DB by Nucleotide ID:NM_001320585Re-query CCDS DB by Protein ID:NP_001307514Link to BLAST:NP_001307514.1
Original member Current member NCBI NM_017730.4 NP_060200.2 Accepted alive Link to Nucleotide Sequence:NM_017730.4Link to Protein Sequence:NP_060200.2Re-query CCDS DB by Nucleotide ID:NM_017730Re-query CCDS DB by Protein ID:NP_060200Link to BLAST:NP_060200.2
Original member Current member NCBI NM_198880.3 NP_942581.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198880.3Link to Protein Sequence:NP_942581.1Re-query CCDS DB by Nucleotide ID:NM_198880Re-query CCDS DB by Protein ID:NP_942581Link to BLAST:NP_942581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307509.1 776 Q2TAL8 776 100% 0 0
NP_001307510.1 776 Q2TAL8 776 100% 0 0
NP_001307511.1 776 Q2TAL8 776 100% 0 0
NP_001307512.1 776 Q2TAL8 776 100% 0 0
NP_001307513.1 776 Q2TAL8 776 100% 0 0
NP_001307514.1 776 Q2TAL8 776 100% 0 0
NP_060200.2 776 Q2TAL8 776 100% 0 0
NP_942581.1 776 Q2TAL8 776 100% 0 0

Chromosomal Locations for CCDS 2787.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 49030452 49030644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49032183 49032273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49032622 49032773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49033120 49033228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49044390 49044504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49046425 49046579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49047069 49047246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49056862 49057890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49076709 49077017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2331 nt):
ATGAATAATTCCCTAGAGAACACCATCTCCTTTGAAGAGTACATCCGAGTAAAGGCACGGTCTGTCCCGC
AACACAGGATGAAGGAATTTCTGGACTCACTGGCCTCTAAGGGGCCAGAAGCCCTTCAGGAGTTCCAGCA
GACAGCCACCACTACCATGGTGTACCAACAGGGTGGGAACTGCATATACACAGACAGCACTGAAGTGGCT
GGGTCTTTGCTTGAACTTGCCTGTCCAGTCACCACCAGTGTTCAGCCACAAACCCAGCAAGAACAGCAGA
TCCAGGTTCAGCAGCCGCAGCAGGTTCAGGTCCAGGTGCAGGTACAGCAGTCTCCGCAACAGGTCTCGGC
TCAGCTCTCCCCACAACTCACCGTTCACCAGCCTACTGAGCAACCCATCCAGGTCCAGGTGCAGATCCAA
GGCCAGGCACCACAGTCAGCAGCCCCCTCCATTCAGACCCCGTCTCTGCAGAGTCCCAGTCCCTCGCAGC
TGCAAGCAGCTCAGATCCAGGTGCAGCACGTGCAAGCAGCCCAGCAGATCCAGGCTGCAGAAATCCCGGA
GGAGCACATCCCACATCAGCAAATCCAGGCTCAGCTGGTGGCTGGCCAGTCTCTTGCTGGTGGTCAGCAG
ATCCAAATCCAGACCGTGGGTGCCCTTTCCCCACCACCATCCCAGCAGGGCTCACCCCGGGAAGGGGAGC
GGCGGGTTGGCACGGCCAGTGTCCTCCAACCAGTGAAGAAGCGCAAAGTGGACATGCCCATCACTGTGTC
CTACGCCATCTCAGGGCAGCCGGTGGCCACCGTGCTGGCCATTCCACAGGGCCAGCAGCAGAGTTATGTG
TCTTTGAGGCCAGACTTACTGACAGTAGACAGTGCCCACCTGTACAGTGCCACTGGGACCATTACTAGCC
CTACAGGAGAAACCTGGACCATCCCTGTTTATTCTGCCCAGCCCCGGGGGGACCCTCAGCAGCAGAGCAT
TACCCACATTGCCATTCCCCAGGAAGCCTACAACGCAGTTCACGTCAGTGGCTCACCCACAGCCCTGGCA
GCTGTTAAGCTGGAGGATGACAAGGAGAAGATGGTGGGCACCACATCTGTAGTGAAAAACTCCCATGAAG
AGGTAGTGCAGACCCTTGCAAACTCTCTCTTTCCAGCACAGTTCATGAATGGCAACATCCACATTCCAGT
GGCTGTGCAGGCTGTGGCAGGCACGTACCAGAATACGGCTCAAACTGTCCATATATGGGACCCCCAACAG
CAGCCGCAGCAGCAAACTCCCCAGGAACAGACACCACCACCACAGCAGCAGCAGCAGCAACTCCAAGTTA
CTTGTTCAGCTCAAACTGTCCAGGTTGCTGAAGTTGAACCACAGTCACAGCCACAGCCTTCCCCAGAACT
TCTGCTTCCAAATTCTTTGAAGCCAGAAGAAGGGCTTGAAGTATGGAAAAACTGGGCCCAGACCAAGAAT
GCTGAACTAGAGAAGGATGCTCAGAACAGATTGGCACCCATTGGGAGGCGCCAACTGCTGCGATTCCAGG
AAGATCTCATCTCCTCTGCTGTGGCAGAGTTGAATTATGGGCTCTGTCTAATGACACGGGAAGCTCGAAA
TGGAGAAGGTGAACCCTATGACCCAGATGTGCTCTACTATATTTTCCTGTGTATTCAAAAGTATCTTTTT
GAAAATGGAAGGGTAGATGACATTTTCTCCGATCTTTATTATGTTCGGTTCACGGAGTGGCTACATGAAG
TTCTGAAGGATGTTCAGCCCCGGGTCACTCCACTTGGCTATGTCTTGCCCAGCCACGTGACTGAGGAGAT
GCTATGGGAGTGCAAGCAGCTTGGGGCTCACTCCCCCTCCACCTTGCTGACCACCCTCATGTTCTTTAAT
ACCAAGTACTTCCTATTGAAGACAGTGGACCAGCACATGAAGCTGGCCTTCTCCAAGGTCTTGCGACAGA
CAAAGAAGAACCCCTCTAATCCCAAGGATAAAAGCACGAGTATCCGGTACTTGAAGGCCCTTGGAATACA
CCAGACTGGCCAGAAAGTTACAGATGACATGTATGCAGAACAGACGGAAAATCCAGAGAATCCATTGAGA
TGTCCCATCAAGCTCTATGATTTCTACCTCTTCAAATGCCCCCAGAGTGTGAAAGGCCGGAATGACACCT
TTTACCTGACACCTGAGCCAGTGGTGGCCCCCAACAGCCCAATCTGGTACTCAGTCCAGCCTATCAGCAG
AGAGCAGATGGGACAAATGCTGACGCGGATCCTGGTGATAAGAGAAATTCAGGAGGCCATCGCAGTGGCC
AATGCAAGCACTATGCACTGA

Translation (776 aa):
MNNSLENTISFEEYIRVKARSVPQHRMKEFLDSLASKGPEALQEFQQTATTTMVYQQGGNCIYTDSTEVA
GSLLELACPVTTSVQPQTQQEQQIQVQQPQQVQVQVQVQQSPQQVSAQLSPQLTVHQPTEQPIQVQVQIQ
GQAPQSAAPSIQTPSLQSPSPSQLQAAQIQVQHVQAAQQIQAAEIPEEHIPHQQIQAQLVAGQSLAGGQQ
IQIQTVGALSPPPSQQGSPREGERRVGTASVLQPVKKRKVDMPITVSYAISGQPVATVLAIPQGQQQSYV
SLRPDLLTVDSAHLYSATGTITSPTGETWTIPVYSAQPRGDPQQQSITHIAIPQEAYNAVHVSGSPTALA
AVKLEDDKEKMVGTTSVVKNSHEEVVQTLANSLFPAQFMNGNIHIPVAVQAVAGTYQNTAQTVHIWDPQQ
QPQQQTPQEQTPPPQQQQQQLQVTCSAQTVQVAEVEPQSQPQPSPELLLPNSLKPEEGLEVWKNWAQTKN
AELEKDAQNRLAPIGRRQLLRFQEDLISSAVAELNYGLCLMTREARNGEGEPYDPDVLYYIFLCIQKYLF
ENGRVDDIFSDLYYVRFTEWLHEVLKDVQPRVTPLGYVLPSHVTEEMLWECKQLGAHSPSTLLTTLMFFN
TKYFLLKTVDQHMKLAFSKVLRQTKKNPSNPKDKSTSIRYLKALGIHQTGQKVTDDMYAEQTENPENPLR
CPIKLYDFYLFKCPQSVKGRNDTFYLTPEPVVAPNSPIWYSVQPISREQMGQMLTRILVIREIQEAIAVA
NASTMH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH