NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5517.1 Public Homo sapiens 7 LANCL2 24 110 108 CCDS HistoryNCBI Gene:55915Re-query CCDS DB by CCDS ID:5517.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5517.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254770.3 ENSP00000254770.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254770.3Link to Ensembl Protein Viewer:ENSP00000254770.2Re-query CCDS DB by Nucleotide ID:ENST00000254770Re-query CCDS DB by Protein ID:ENSP00000254770
Original member Current member NCBI NM_018697.4 NP_061167.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018697.4Link to Protein Sequence:NP_061167.1Re-query CCDS DB by Nucleotide ID:NM_018697Re-query CCDS DB by Protein ID:NP_061167Link to BLAST:NP_061167.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061167.1 450 Q9NS86 450 100% 0 0

Chromosomal Locations for CCDS 5517.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 55366026 55366229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55391793 55391910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55398423 55398630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55399957 55400104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55401174 55401320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55411907 55412089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55425254 55425430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55428375 55428447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55431226 55431320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGGGCGAGACCATGTCAAAGAGGCTGAAGCTCCACCTGGGAGGGGAGGCAGAAATGGAGGAACGGGCGT
TCGTCAACCCCTTCCCGGACTACGAGGCCGCCGCCGGGGCGCTGCTCGCCTCCGGAGCGGCCGAAGAGAC
AGGCTGTGTTCGTCCCCCGGCGACCACGGATGAGCCCGGCCTCCCTTTTCATCAGGACGGGAAGATCATT
CATAATTTCATAAGACGGATCCAGACCAAAATTAAAGATCTTCTGCAGCAAATGGAAGAAGGGCTGAAGA
CAGCTGATCCCCATGACTGCTCTGCTTATACTGGCTGGACAGGCATAGCCCTTTTGTACCTGCAGTTGTA
CCGGGTCACATGTGACCAAACCTACCTGCTCCGATCCCTGGATTACGTAAAAAGAACACTTCGGAATCTG
AATGGCCGCAGGGTCACCTTCCTCTGTGGGGATGCTGGCCCCCTGGCTGTTGGAGCTGTGATTTATCACA
AACTCAGAAGTGACTGTGAGTCCCAGGAATGTGTCACAAAACTTTTGCAGCTCCAGAGATCGGTTGTCTG
CCAAGAATCAGACCTTCCTGATGAGCTGCTTTATGGACGGGCAGGTTATCTGTATGCCTTACTGTACCTG
AACACAGAGATAGGTCCAGGCACCGTGTGTGAGTCAGCTATTAAAGAGGTAGTCAATGCTATTATTGAAT
CGGGTAAGACTTTGTCAAGGGAAGAAAGAAAAACGGAGCGCTGCCCGCTGTTGTACCAGTGGCACCGGAA
GCAGTACGTTGGAGCAGCCCATGGCATGGCTGGAATTTACTATATGTTAATGCAGCCGGCAGCAAAAGTG
GACCAAGAAACCTTGACAGAAATGGTGAAACCCAGTATTGATTATGTGCGCCACAAAAAATTCCGATCTG
GGAATTACCCATCATCATTAAGCAATGAAACAGACCGGCTGGTGCACTGGTGCCACGGCGCCCCGGGGGT
CATCCACATGCTCATGCAGGCGTACAAGGTCTTTAAGGAGGAGAAGTACTTGAAAGAGGCCATGGAGTGT
AGCGATGTGATTTGGCAGCGAGGTTTGCTGCGGAAGGGCTACGGGATATGCCATGGGACTGCTGGCAACG
GCTATTCCTTCCTGTCCCTTTACCGTCTCACGCAGGATAAGAAGTACCTCTACCGAGCTTGCAAGTTTGC
AGAGTGGTGTCTAGATTACGGAGCACACGGGTGCCGCATTCCTGACAGACCCTATTCGCTCTTTGAAGGC
ATGGCTGGCGCTATTCACTTTCTCTCTGATGTCCTGGGACCAGAGACATCACGGTTTCCAGCATTTGAAC
TTGACTCTTCGAAGAGGGATTAA

Translation (450 aa):
MGETMSKRLKLHLGGEAEMEERAFVNPFPDYEAAAGALLASGAAEETGCVRPPATTDEPGLPFHQDGKII
HNFIRRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQTYLLRSLDYVKRTLRNL
NGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQLQRSVVCQESDLPDELLYGRAGYLYALLYL
NTEIGPGTVCESAIKEVVNAIIESGKTLSREERKTERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKV
DQETLTEMVKPSIDYVRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKEAMEC
SDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPYSLFEG
MAGAIHFLSDVLGPETSRFPAFELDSSKRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH